RPSBLAST alignment for GI: 254780617 and conserved domain: TIGR03324

>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase. Length = 497

 Score =  535 bits (1381), Expect = e-153
 Identities = 233/473 (49%), Positives = 327/473 (69%), Gaps = 8/473 (1%)

Query: 27  EIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVYGMALNLEVDNVGVVILGSYKEISEGD 86
           E+G V S+  GIARV+GL  +   E+++F  G+ G+A N++ D VGVV+LG Y  +  GD
Sbjct: 27  EVGTVESVSTGIARVHGLPGVGFEELLRFPGGLLGIAFNVDEDEVGVVLLGEYSHLQAGD 86

Query: 87  IVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPL 146
            V+RTGR++DVPVG  LLGRVVD LG P+DG GP+    R   E  AP I+ R  V  PL
Sbjct: 87  EVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPL 146

Query: 147 STGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAI 206
            TG+K ID+LIPIGRGQRELI+GDR+TGKT+I +DT LNQK  +        V CIY AI
Sbjct: 147 QTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGRN--------VLCIYCAI 198

Query: 207 GQKRSSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALI 266
           GQ+ S+VA+ V  L + GA+ Y+IVVV   +DP  +Q +AP+A  ++GE+F + G   LI
Sbjct: 199 GQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLI 258

Query: 267 AYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPV 326
            YDDL +HA AYR+LSLLLRRPPGREA+PGD+FY+HSRLLER+  +++ LG GSLTALP+
Sbjct: 259 VYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLTALPI 318

Query: 327 IETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQV 386
           IET+  ++SAYIPTN+ISITDGQI+L   LF  G+ PA+++G SVSRVG  AQ+ A + V
Sbjct: 319 IETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAV 378

Query: 387 SGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSKGERLTELLKQPQFSPLAMEEQVVMIF 446
           +G +K   AQ+ E+ +F++F + LD +T+K +  G R+   LKQ Q SPL + +Q+ ++ 
Sbjct: 379 AGDLKLAYAQFEELETFARFGARLDENTRKTIEHGRRIRACLKQTQSSPLTVPQQIAILL 438

Query: 447 AGISGCLDEVAVSQVRKFETNFLSHMRVSSQDILEDIRKQKVLTDDIRSKLIN 499
           A  +G  D V +  + + E+   + +     D+ E ++  K L+D+ R ++++
Sbjct: 439 ALTNGLFDGVDLDAMPEAESAIRAAVTSLPADLRERLQSGKKLSDEDREQILD 491