RPSBLAST alignment for GI: 254780617 and conserved domain: PRK06936

>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional. Length = 439
 Score =  173 bits (439), Expect = 1e-43
 Identities = 131/448 (29%), Positives = 202/448 (45%), Gaps = 36/448 (8%)

Query: 8   ISDILRKRIKDFGNDSEFSEI-GRVLSIGDGIARVYGLNNIRAGEMVQFSHGVYGMALNL 66
           I   LR  I      S   +I GRV  +   I +   +  +R GE+    +    ++L  
Sbjct: 7   IPHHLRHAI----VGSRLIQIRGRVTQVTGTILKAV-VPGVRIGELCYLRNPDNSLSLQA 61

Query: 67  EVDNVGVV-------ILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKG 119
           EV  +G          LG    IS    V  TG +  V VG  LLGRV+D LG P DG  
Sbjct: 62  EV--IGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGH 119

Query: 120 PIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSII 179
           P +        ADAP  + R+ +  PLS G++ ID L+  G GQR  I      GK++++
Sbjct: 120 PPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLL 179

Query: 180 LDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGA--LSYSIVVVASAS 237
                   +S  + +E D    +   IG++   V  F+++  D G   L  +++VVA++ 
Sbjct: 180 --------ASLIRSAEVD--VTVLALIGERGREVREFIES--DLGEEGLRKAVLVVATSD 227

Query: 238 DPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGD 297
            P+  +  A F   ++ EYFRD G   L+  D + + A A R++ L    PP R  YP  
Sbjct: 228 RPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPS 287

Query: 298 VFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELF 357
           VF    RL+ERA   SD    GS+TAL  +  + +D++  +     SI DG I L  +L 
Sbjct: 288 VFAALPRLMERAG-QSD---KGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLA 343

Query: 358 YQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSK---FSSDLDSST 414
                PAI++  S SRV +    K  K  +G ++  LA+Y E+    +   +    D   
Sbjct: 344 AANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEA 403

Query: 415 QKFLSKGERLTELLKQPQFSPLAMEEQV 442
            + + +   +   L+Q         E +
Sbjct: 404 DQAIERIGAIRGFLRQGTHELSHFNETL 431