RPSBLAST alignment for GI: 254780617 and conserved domain: cd01128

>gnl|CDD|29994 cd01128, rho_factor, Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.. Length = 249

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 32/231 (13%)

Query: 151 KAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKR 210
           + +D   PIG+GQR LI+   K GKT+++      Q  ++       +VY I + I ++ 
Sbjct: 5   RVVDLFAPIGKGQRGLIVAPPKAGKTTLL------QSIANAITKNHPEVYLIVLLIDERP 58

Query: 211 SSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDD 270
             V    ++++         V+ ++  +P    +          +   ++G   +I  D 
Sbjct: 59  EEVTDMQRSVK-------GEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDS 111

Query: 271 LQKHAVAYRQLSLLLRRPPGREAYPGDV----FYLHSRLLERAAKMSDALGAGSLT--AL 324
           + + A AY  +      PP  +   G V     +   R    A  + +    GSLT  A 
Sbjct: 112 ITRLARAYNTVV-----PPSGKILSGGVDANALHKPKRFFGAARNIEE---GGSLTIIAT 163

Query: 325 PVIET--QVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSR 373
            +++T  +++DV   I        + ++ L+  L  + I PAI+I  S +R
Sbjct: 164 ALVDTGSRMDDV---IFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR 211