RPSBLAST alignment for GI: 254780617 and conserved domain: cd01136
>gnl|CDD|30002 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.. Length = 326
Score = 183 bits (466), Expect = 1e-46
Identities = 107/339 (31%), Positives = 169/339 (49%), Gaps = 17/339 (5%)
Query: 95 VDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAID 154
+ VPVG LLGRV+DA G P+DGKGP+ E R P ++R+ + E L TG++AID
Sbjct: 2 LSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAID 61
Query: 155 SLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVA 214
L+ +G+GQR I GK++++ +G+ D + IG++ V
Sbjct: 62 GLLTVGKGQRLGIFAGSGVGKSTLL--------GMIARGTTADVN--VIALIGERGREVR 111
Query: 215 RFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKH 274
F++ L S+VVVA++ + +++ A + A+ EYFRD G L+ D L +
Sbjct: 112 EFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRF 171
Query: 275 AVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDV 334
A+A R++ L PP + YP VF L RLLERA GS+TA + + +D+
Sbjct: 172 AMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDK----GSITAFYTVLVEGDDL 227
Query: 335 SAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGEL 394
+ I V SI DG I L L G PAI++ S+SR+ +A K+ + ++ L
Sbjct: 228 NEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELL 287
Query: 395 AQYREMS---SFSKFSSDLDSSTQKFLSKGERLTELLKQ 430
+ Y+E+ + D + + ++ LKQ
Sbjct: 288 SAYQEVEDLIRIGAYKKGSDPEVDEAIKLLPKIEAFLKQ 326