RPSBLAST alignment for GI: 254780617 and conserved domain: cd01136

>gnl|CDD|30002 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.. Length = 326
 Score =  183 bits (466), Expect = 1e-46
 Identities = 107/339 (31%), Positives = 169/339 (49%), Gaps = 17/339 (5%)

Query: 95  VDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAID 154
           + VPVG  LLGRV+DA G P+DGKGP+  E R       P  ++R+ + E L TG++AID
Sbjct: 2   LSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAID 61

Query: 155 SLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVA 214
            L+ +G+GQR  I      GK++++            +G+  D    +   IG++   V 
Sbjct: 62  GLLTVGKGQRLGIFAGSGVGKSTLL--------GMIARGTTADVN--VIALIGERGREVR 111

Query: 215 RFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKH 274
            F++       L  S+VVVA++ +   +++ A +   A+ EYFRD G   L+  D L + 
Sbjct: 112 EFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRF 171

Query: 275 AVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDV 334
           A+A R++ L    PP  + YP  VF L  RLLERA         GS+TA   +  + +D+
Sbjct: 172 AMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDK----GSITAFYTVLVEGDDL 227

Query: 335 SAYIPTNVISITDGQIFLETELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGEL 394
           +  I   V SI DG I L   L   G  PAI++  S+SR+ +A      K+ +  ++  L
Sbjct: 228 NEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELL 287

Query: 395 AQYREMS---SFSKFSSDLDSSTQKFLSKGERLTELLKQ 430
           + Y+E+        +    D    + +    ++   LKQ
Sbjct: 288 SAYQEVEDLIRIGAYKKGSDPEVDEAIKLLPKIEAFLKQ 326