BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (509 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/509 (100%), Positives = 509/509 (100%) Query: 1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY 60 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY Sbjct: 1 MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY 60 Query: 61 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP 120 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP Sbjct: 61 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP 120 Query: 121 IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL 180 IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL Sbjct: 121 IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL 180 Query: 181 DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240 DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA Sbjct: 181 DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240 Query: 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY 300 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY Sbjct: 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY 300 Query: 301 LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG 360 LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG Sbjct: 301 LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG 360 Query: 361 IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK 420 IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK Sbjct: 361 IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK 420 Query: 421 GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL 480 GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL Sbjct: 421 GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL 480 Query: 481 EDIRKQKVLTDDIRSKLINEIKVFLEDFN 509 EDIRKQKVLTDDIRSKLINEIKVFLEDFN Sbjct: 481 EDIRKQKVLTDDIRSKLINEIKVFLEDFN 509 >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 110 bits (275), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 158/345 (45%), Gaps = 25/345 (7%) Query: 61 GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDG--- 117 G + + +D V + +G +EIS GD+V GR P GRV++ALG PIDG Sbjct: 60 GQVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSAC-WCGRVINALGKPIDGDDS 118 Query: 118 --KGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGK 175 KG + E S P + RQ V + TGI+ ID P+ GQR + GK Sbjct: 119 LGKGDLSMEIMS----KVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGK 174 Query: 176 TSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVK-ALEDRGALSYSIVVVA 234 ++++ + + DK I +G++ V F++ L D L S+VVVA Sbjct: 175 STLL--SMFARSDCFDK--------VIISLVGERGREVREFIEDYLGDN--LKKSVVVVA 222 Query: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAY 294 ++ + ++ +AP + EYF G + L+ D + + A + R+++ P Y Sbjct: 223 TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGY 282 Query: 295 PGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLET 354 P VF RLLER G++TA+ + ++ + I +V SI DG I L Sbjct: 283 PTSVFSELPRLLERIGPSEKE--KGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340 Query: 355 ELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYRE 399 L +G P ++ SVSR+ A K++ ++ + ++ E Sbjct: 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEE 385 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 94.4 bits (233), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 23/297 (7%) Query: 82 ISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQS 141 +S GD V TG + VPVG LGR+++ +G P+D +G I ++ +P ++ + Sbjct: 69 LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQST 128 Query: 142 VCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYC 201 L+TGIK ID + P +G + + G GKT +I++ N +H Y Sbjct: 129 DASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YS 181 Query: 202 IYVAIGQK-RSSVARFVKALEDRGAL-----------SYSIVVVASASDPAPMQLLAPFA 249 ++ +G++ R + + ++ + + S ++ ++P + Sbjct: 182 VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 Query: 250 GCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERA 309 G + E+FRD G L D++ + A ++S LL R P Y + L ER Sbjct: 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER- 300 Query: 310 AKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAIN 366 ++ L GS+T++ I +D++ P + D L ++ +GI PAI+ Sbjct: 301 --ITTTL-KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAID 354 >gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 13/131 (9%) Query: 151 KAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKR 210 + ID + PIG+GQR LI+ +TGKT ++ Q +H + Y I + I ++ Sbjct: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILL------QNIAHSIKKNHPECYLIVLLIDERP 216 Query: 211 SSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDD 270 V ++++ G + S ++A +++ A C + EY G +I D Sbjct: 217 EEVTDMQRSVQ--GEVISSTFDESAARHVQVAEMVIAKAKCLV-EY----GLDVVILLDS 269 Query: 271 LQKHAVAYRQL 281 + + AY L Sbjct: 270 ITRLCRAYNVL 280 >gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 32.0 bits (71), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Query: 175 KTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVA 234 K + L+TF + ++++ S+ ++ I+ G+ R+ RF+ ++ G++ Y Sbjct: 422 KPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVD--GSVEY-FNENG 478 Query: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQ 272 +S P ++ PF G R YH ++ Y + Sbjct: 479 KSSRPFLLRTPVPFGRMTSGFGMR---YHPILGYSRMH 513 >gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 18/29 (62%) Query: 8 ISDILRKRIKDFGNDSEFSEIGRVLSIGD 36 I+D + K KD G+D+ FSE R +GD Sbjct: 522 INDRIIKTFKDQGSDAWFSEGSRDFFLGD 550 >gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 349 Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 208 QKRSSVARFVKALEDRGALSYSIVVVASAS---DPAPMQLLAPFAGCAMGEYFRDNGYHA 264 R+ + F + L++ +++ + V S++ D Q+ P + + F D+G++A Sbjct: 216 HSRTVLQSFSRGLDEISSITRGFLGVLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNA 275 Query: 265 LIAYDDLQKHAVAYRQL 281 IA+ + A+ + L Sbjct: 276 YIAFLAMFSWAIGFMNL 292 >gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 954 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 272 QKHAVAYRQLSLLLRRPPG-------REAYP---GDVFYLHSRLLERAAKMSDALGAGSL 321 QK + L+L L P G R+A+ +YL SR K + G L Sbjct: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 Query: 322 TALPVIETQVNDVSAYIPTNVISITDGQI 350 A+PV + + S IP++ S T+ ++ Sbjct: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEV 952 >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Query: 61 GMALNLEVDNVGVVILGSYKEISEGDI----VKRTGRIVDVPVGLELLGR 106 GMA N+ N+G V+ G I DI + R D P G +LGR Sbjct: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234 >gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 268 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 96 DVP-VGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQ 138 D+P + E+L V+ L NPI G + T+ D P I++ Sbjct: 108 DIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVK 151 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 23.5 bits (49), Expect = 9.0, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 21/116 (18%) Query: 145 PLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLN------QKSSH-DKGSEKD 197 PL+ G++ I I LI G T K++ L+ N +K H KG + Sbjct: 232 PLAWGVQHIQEKI------NRLIFGS--TTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDY 283 Query: 198 KVYCIYVAIGQKRS------SVARFVKALEDRGALSYSIVVVASASDPAPMQLLAP 247 K Y I++ G+ S + + RGA+ Y+I V A A+D +P Sbjct: 284 KKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASP 339 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.137 0.380 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 303,750 Number of Sequences: 1233 Number of extensions: 12539 Number of successful extensions: 56 Number of sequences better than 100.0: 18 Number of HSP's better than 100.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 18 length of query: 509 length of database: 328,796 effective HSP length: 78 effective length of query: 431 effective length of database: 232,622 effective search space: 100260082 effective search space used: 100260082 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)