BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
         (509 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 509

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/509 (100%), Positives = 509/509 (100%)

Query: 1   MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY 60
           MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY
Sbjct: 1   MDIHAAEISDILRKRIKDFGNDSEFSEIGRVLSIGDGIARVYGLNNIRAGEMVQFSHGVY 60

Query: 61  GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP 120
           GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP
Sbjct: 61  GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGP 120

Query: 121 IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL 180
           IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL
Sbjct: 121 IKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIIL 180

Query: 181 DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240
           DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA
Sbjct: 181 DTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVASASDPA 240

Query: 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY 300
           PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY
Sbjct: 241 PMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFY 300

Query: 301 LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG 360
           LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG
Sbjct: 301 LHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQG 360

Query: 361 IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK 420
           IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK
Sbjct: 361 IRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYREMSSFSKFSSDLDSSTQKFLSK 420

Query: 421 GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL 480
           GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL
Sbjct: 421 GERLTELLKQPQFSPLAMEEQVVMIFAGISGCLDEVAVSQVRKFETNFLSHMRVSSQDIL 480

Query: 481 EDIRKQKVLTDDIRSKLINEIKVFLEDFN 509
           EDIRKQKVLTDDIRSKLINEIKVFLEDFN
Sbjct: 481 EDIRKQKVLTDDIRSKLINEIKVFLEDFN 509


>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 438

 Score =  110 bits (275), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 158/345 (45%), Gaps = 25/345 (7%)

Query: 61  GMALNLEVDNVGVVILGSYKEISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDG--- 117
           G  + + +D V +  +G  +EIS GD+V   GR    P      GRV++ALG PIDG   
Sbjct: 60  GQVIRINLDIVYICPVGIGEEISLGDLVFHWGRFRISPSAC-WCGRVINALGKPIDGDDS 118

Query: 118 --KGPIKCEQRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGK 175
             KG +  E  S      P  + RQ V +   TGI+ ID   P+  GQR  +      GK
Sbjct: 119 LGKGDLSMEIMS----KVPPAMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGK 174

Query: 176 TSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVK-ALEDRGALSYSIVVVA 234
           ++++  +   +    DK         I   +G++   V  F++  L D   L  S+VVVA
Sbjct: 175 STLL--SMFARSDCFDK--------VIISLVGERGREVREFIEDYLGDN--LKKSVVVVA 222

Query: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAY 294
           ++ +   ++ +AP     + EYF   G + L+  D + + A + R+++      P    Y
Sbjct: 223 TSDESPILRKMAPLTAVTIAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGY 282

Query: 295 PGDVFYLHSRLLERAAKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLET 354
           P  VF    RLLER          G++TA+  +    ++ +  I  +V SI DG I L  
Sbjct: 283 PTSVFSELPRLLERIGPSEKE--KGNITAVISVLVDGDNHNDPIADSVRSILDGHIVLNR 340

Query: 355 ELFYQGIRPAINIGLSVSRVGSAAQVKAMKQVSGAVKGELAQYRE 399
            L  +G  P ++   SVSR+   A     K++  ++   + ++ E
Sbjct: 341 SLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEE 385


>gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 478

 Score = 94.4 bits (233), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 23/297 (7%)

Query: 82  ISEGDIVKRTGRIVDVPVGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQRQS 141
           +S GD V  TG  + VPVG   LGR+++ +G P+D +G I   ++      +P   ++ +
Sbjct: 69  LSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQST 128

Query: 142 VCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYC 201
               L+TGIK ID + P  +G +  + G    GKT +I++   N   +H         Y 
Sbjct: 129 DASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------YS 181

Query: 202 IYVAIGQK-RSSVARFVKALEDRGAL-----------SYSIVVVASASDPAPMQLLAPFA 249
           ++  +G++ R     + + ++ +  +           S   ++    ++P   +      
Sbjct: 182 VFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241

Query: 250 GCAMGEYFRDNGYHALIAYDDLQKHAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERA 309
           G  + E+FRD G   L   D++ +   A  ++S LL R P    Y   +      L ER 
Sbjct: 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQER- 300

Query: 310 AKMSDALGAGSLTALPVIETQVNDVSAYIPTNVISITDGQIFLETELFYQGIRPAIN 366
             ++  L  GS+T++  I    +D++   P    +  D    L  ++  +GI PAI+
Sbjct: 301 --ITTTL-KGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAID 354


>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 38.5 bits (88), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 13/131 (9%)

Query: 151 KAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKR 210
           + ID + PIG+GQR LI+   +TGKT ++      Q  +H       + Y I + I ++ 
Sbjct: 163 RVIDLIAPIGKGQRSLIVAPPRTGKTILL------QNIAHSIKKNHPECYLIVLLIDERP 216

Query: 211 SSVARFVKALEDRGALSYSIVVVASASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDD 270
             V    ++++  G +  S    ++A      +++   A C + EY    G   +I  D 
Sbjct: 217 EEVTDMQRSVQ--GEVISSTFDESAARHVQVAEMVIAKAKCLV-EY----GLDVVILLDS 269

Query: 271 LQKHAVAYRQL 281
           + +   AY  L
Sbjct: 270 ITRLCRAYNVL 280


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 32.0 bits (71), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 175 KTSIILDTFLNQKSSHDKGSEKDKVYCIYVAIGQKRSSVARFVKALEDRGALSYSIVVVA 234
           K +  L+TF +   ++++ S+  ++  I+   G+ R+   RF+  ++  G++ Y      
Sbjct: 422 KPTDFLETFFSVNHANNQASDDSELLYIHARFGETRTRFYRFLNPVD--GSVEY-FNENG 478

Query: 235 SASDPAPMQLLAPFAGCAMGEYFRDNGYHALIAYDDLQ 272
            +S P  ++   PF     G   R   YH ++ Y  + 
Sbjct: 479 KSSRPFLLRTPVPFGRMTSGFGMR---YHPILGYSRMH 513


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 963

 Score = 25.8 bits (55), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 8   ISDILRKRIKDFGNDSEFSEIGRVLSIGD 36
           I+D + K  KD G+D+ FSE  R   +GD
Sbjct: 522 INDRIIKTFKDQGSDAWFSEGSRDFFLGD 550


>gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 349

 Score = 25.8 bits (55), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 208 QKRSSVARFVKALEDRGALSYSIVVVASAS---DPAPMQLLAPFAGCAMGEYFRDNGYHA 264
             R+ +  F + L++  +++   + V S++   D    Q+  P     + + F D+G++A
Sbjct: 216 HSRTVLQSFSRGLDEISSITRGFLGVLSSAFGKDTRLNQISGPVGIARIAKNFFDHGFNA 275

Query: 265 LIAYDDLQKHAVAYRQL 281
            IA+  +   A+ +  L
Sbjct: 276 YIAFLAMFSWAIGFMNL 292


>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 25.4 bits (54), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 272 QKHAVAYRQLSLLLRRPPG-------REAYP---GDVFYLHSRLLERAAKMSDALGAGSL 321
           QK     + L+L L  P G       R+A+       +YL SR      K +     G L
Sbjct: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923

Query: 322 TALPVIETQVNDVSAYIPTNVISITDGQI 350
            A+PV +   +  S  IP++  S T+ ++
Sbjct: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEV 952


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score = 25.4 bits (54), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 61  GMALNLEVDNVGVVILGSYKEISEGDI----VKRTGRIVDVPVGLELLGR 106
           GMA N+   N+G V+ G    I   DI    +    R  D P G  +LGR
Sbjct: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234


>gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 268

 Score = 25.0 bits (53), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 96  DVP-VGLELLGRVVDALGNPIDGKGPIKCEQRSCTEADAPGIIQ 138
           D+P +  E+L  V+  L NPI   G +       T+ D P I++
Sbjct: 108 DIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVK 151


>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score = 23.5 bits (49), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 21/116 (18%)

Query: 145 PLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLN------QKSSH-DKGSEKD 197
           PL+ G++ I   I        LI G   T K++  L+   N      +K  H  KG +  
Sbjct: 232 PLAWGVQHIQEKI------NRLIFGS--TTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDY 283

Query: 198 KVYCIYVAIGQKRS------SVARFVKALEDRGALSYSIVVVASASDPAPMQLLAP 247
           K Y I++  G+  S          +    + RGA+ Y+I V A A+D       +P
Sbjct: 284 KKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASP 339


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,750
Number of Sequences: 1233
Number of extensions: 12539
Number of successful extensions: 56
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 18
length of query: 509
length of database: 328,796
effective HSP length: 78
effective length of query: 431
effective length of database: 232,622
effective search space: 100260082
effective search space used: 100260082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)