HHsearch alignment for GI: 254780618 and conserved domain: COG0712

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion].
Probab=100.00  E-value=8.6e-39  Score=276.64  Aligned_cols=176  Identities=34%  Similarity=0.498  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             44455579999999999863998999999999999950699899985184522045657889986204664346899999
Q gi|254780618|r    7 LFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRI   86 (186)
Q Consensus         7 ~~~~ia~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~sp~i~~~~K~~ii~~i~~~~~~~~~~~~fl~~   86 (186)
T Consensus         3 ~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~~-~~~~~~nfL~l   81 (178)
T COG0712           3 ELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKKI-GDPLLQNFLRL   81 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_conf             26788899999999999987419999999999999982677699986485679899999999998433-85899999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHCEEEEEECCEE
Q ss_conf             85332011014249999999888765553310105689989999999999997489589999997414023899979978
Q gi|254780618|r   87 LVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQ  166 (186)
Q Consensus        87 L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~slIGG~~i~vg~~~  166 (186)
T Consensus        82 l~en~Rl~~l~~i~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~~~v~i~~~VD~sliGG~iI~vgd~v  161 (178)
T COG0712          82 LAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFGKKVKLNNKIDPSLIGGLIIKVGDEV  161 (178)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCEEEEECCEE
T ss_conf             99754164699999999999999629068999866889999999999999999589723786677788185699989999


Q ss_pred             EEHHHHHHHHHHHHHHH
Q ss_conf             50279999999999852
Q gi|254780618|r  167 IDASLRTQLLKLGCILK  183 (186)
Q Consensus       167 iD~Si~~kL~~l~~~l~  183 (186)
T Consensus       162 iD~Svr~~L~~l~~~l~  178 (178)
T COG0712         162 IDGSVRGKLKRLAKALK  178 (178)
T ss_pred             EECCHHHHHHHHHHHCC
T ss_conf             70319999999998519