HHsearch alignment for GI: 254780618 and conserved domain: PRK09098
>PRK09098 type III secretion system protein HrpB; Validated.
Probab=95.00 E-value=0.12 Score=31.38 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=63.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCH-HCEEEEEECCEE
Q ss_conf 5332011014249999999888765553310105689989999999999997489589999997414-023899979978
Q gi|254780618|r 88 VANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSAL-MGGFIVEIGAHQ 166 (186)
Q Consensus 88 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~sl-IGG~~i~vg~~~ 166 (186)
T Consensus 128 ~~e~~~aL~~ra~~~l~~~v---~~~~~l~VRVh-PdD~d~ar~a~~~l~~~~~~~~~i~Vv~D~~L~~G~CI~Etd~G~ 203 (229)
T PRK09098 128 HGEDPAALFARAAQTLEGVL---DGASYLTVRVH-PADLDAARRAFGALAAEGGRNVPVEVVGDPRLAPGACVCEWDFGV 203 (229)
T ss_pred HHCCHHHHHHHHHHHHHHHH---CCCCEEEEEEC-HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCE
T ss_conf 71398889999999999986---24662899988-877999999899998646987213762278789998688358753
Q ss_pred EEHHHHHHHHHHHHHHHHC
Q ss_conf 5027999999999985224
Q gi|254780618|r 167 IDASLRTQLLKLGCILKEV 185 (186)
Q Consensus 167 iD~Si~~kL~~l~~~l~~v 185 (186)
T Consensus 204 IDAsL~~QL~aLr~ai~ra 222 (229)
T PRK09098 204 FDASLDTQLRALRRAIARA 222 (229)
T ss_pred EECCHHHHHHHHHHHHHHH
T ss_conf 7433999999999999998