HHsearch alignment for GI: 254780618 and conserved domain: PRK09098

>PRK09098 type III secretion system protein HrpB; Validated.
Probab=95.00  E-value=0.12  Score=31.38  Aligned_cols=94  Identities=21%  Similarity=0.207  Sum_probs=63.0

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCH-HCEEEEEECCEE
Q ss_conf             5332011014249999999888765553310105689989999999999997489589999997414-023899979978
Q gi|254780618|r   88 VANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECLEKIVGKTVILDVMEDSAL-MGGFIVEIGAHQ  166 (186)
Q Consensus        88 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~V~sa~~ls~~~~~~i~~~l~~~~~~~i~l~~~vD~sl-IGG~~i~vg~~~  166 (186)
T Consensus       128 ~~e~~~aL~~ra~~~l~~~v---~~~~~l~VRVh-PdD~d~ar~a~~~l~~~~~~~~~i~Vv~D~~L~~G~CI~Etd~G~  203 (229)
T PRK09098        128 HGEDPAALFARAAQTLEGVL---DGASYLTVRVH-PADLDAARRAFGALAAEGGRNVPVEVVGDPRLAPGACVCEWDFGV  203 (229)
T ss_pred             HHCCHHHHHHHHHHHHHHHH---CCCCEEEEEEC-HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCE
T ss_conf             71398889999999999986---24662899988-877999999899998646987213762278789998688358753


Q ss_pred             EEHHHHHHHHHHHHHHHHC
Q ss_conf             5027999999999985224
Q gi|254780618|r  167 IDASLRTQLLKLGCILKEV  185 (186)
Q Consensus       167 iD~Si~~kL~~l~~~l~~v  185 (186)
T Consensus       204 IDAsL~~QL~aLr~ai~ra  222 (229)
T PRK09098        204 FDASLDTQLRALRRAIARA  222 (229)
T ss_pred             EECCHHHHHHHHHHHHHHH
T ss_conf             7433999999999999998