RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus str. psy62] (186 letters) >1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} (A:) Length = 134 Score = 91.4 bits (227), Expect = 7e-20 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 3/135 (2%) Query: 8 FSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVI 67 F V Y+ + F + E ++ D ++ + ++ + + L S I Sbjct: 3 FITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVT-KNEQMAELLSGALAPETLAESFI 61 Query: 68 DDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLL 127 + N +R++ NGRL+ LP +++ F + V + + LS Sbjct: 62 AVCGEQLD--ENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQ 119 Query: 128 QQNKLGECLEKIVGK 142 Q K+ +EK + + Sbjct: 120 QLAKISAAMEKRLSR 134 >2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A (S:1-113) Length = 113 Score = 79.2 bits (195), Expect = 3e-16 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 1/111 (0%) Query: 1 MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSM 60 + + GRY+ +L+ ++++ L+ V ++ R+ +L E NP Sbjct: 4 LVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKXAASL-LNPYVKR 62 Query: 61 KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYR 111 + + D F +T+N + +L NGRL+ PA+I +F +R Sbjct: 63 SVKVKSLSDXTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHR 113 >3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A* (A:18-201) Length = 184 Score = 26.4 bits (58), Expect = 2.5 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Query: 79 ITANFLRILVANGRLSVLPAIIK 101 +T F+R +A GR ++PA I Sbjct: 161 VTPEFVRQEIARGRA-IIPANIN 182 >2f2u_A RHO-associated protein kinase 2; enzyme-inhibitor complex, transferase; HET: M77; 2.40A {Bos taurus} PDB: 2h9v_A* 2v55_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* (A:157-358) Length = 202 Score = 25.5 bits (54), Expect = 4.3 Identities = 6/34 (17%), Positives = 10/34 (29%) Query: 44 MESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC 77 M DL + N K + ++V Sbjct: 1 MPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAI 34 >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3fbv_A* (A:91-299) Length = 209 Score = 25.1 bits (53), Expect = 5.5 Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 1/35 (2%) Query: 43 LMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC 77 L+ES ++ + S++ + Sbjct: 8 LVESKNVSDENLKL-QKEYNPISLLRQIASGVAHL 41 >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* (A:99-297) Length = 199 Score = 25.3 bits (54), Expect = 5.6 Identities = 3/34 (8%), Positives = 9/34 (26%) Query: 44 MESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC 77 + L + +V + ++ F Sbjct: 1 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFL 34 >2c30_A Serine/threonine-protein kinase PAK 6; STE20-like, CRIB domain, ATP-binding, transferase, nucleotide-binding, phosphorylation, polymorphism; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2bva_A* (A:124-321) Length = 198 Score = 24.5 bits (52), Expect = 8.4 Identities = 2/34 (5%), Positives = 13/34 (38%) Query: 44 MESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC 77 ++ L + + + +V + +++ + Sbjct: 1 LQGGALTDIVSQVRLNEEQIATVCEAVLQALAYL 34 >2dn4_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Length = 99 Score = 24.3 bits (53), Expect = 9.4 Identities = 8/23 (34%), Positives = 11/23 (47%) Query: 35 DISRLEALLMESADLRFFIHNPL 57 I RLE +L+ +RF I Sbjct: 62 GIPRLERILLAKERIRFVIKKHE 84 >1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} (D:56-121) Length = 66 Score = 24.2 bits (52), Expect = 10.0 Identities = 9/44 (20%), Positives = 17/44 (38%) Query: 51 FFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILVANGRLS 94 F + N +++D I+ + LRI+ N + S Sbjct: 22 FIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIVACNSKKS 65 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.327 0.141 0.401 Gapped Lambda K H 0.267 0.0443 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,325,684 Number of extensions: 54982 Number of successful extensions: 169 Number of sequences better than 10.0: 1 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 11 Length of query: 186 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 103 Effective length of database: 2,150,234 Effective search space: 221474102 Effective search space used: 221474102 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 52 (24.5 bits)