RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit
delta [Candidatus Liberibacter asiaticus str. psy62]
         (186 letters)



>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis,
           F1-ATPase, spectroscopy; NMR {Escherichia coli} (A:)
          Length = 134

 Score = 91.4 bits (227), Expect = 7e-20
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 3/135 (2%)

Query: 8   FSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVI 67
           F  V   Y+ + F  + E   ++   D ++    +  ++  +   +   L       S I
Sbjct: 3   FITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVT-KNEQMAELLSGALAPETLAESFI 61

Query: 68  DDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLL 127
               +         N +R++  NGRL+ LP +++ F  +           V + + LS  
Sbjct: 62  AVCGEQLD--ENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQ 119

Query: 128 QQNKLGECLEKIVGK 142
           Q  K+   +EK + +
Sbjct: 120 QLAKISAAMEKRLSR 134


>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION
           transport, ATP synthesis, phosphoprotein, UBL
           conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos
           taurus} PDB: 2bo5_A 2jmx_A (S:1-113)
          Length = 113

 Score = 79.2 bits (195), Expect = 3e-16
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 1/111 (0%)

Query: 1   MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSM 60
           +         + GRY+ +L+  ++++  L+ V  ++ R+  +L E         NP    
Sbjct: 4   LVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKXAASL-LNPYVKR 62

Query: 61  KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYR 111
             +   + D      F  +T+N + +L  NGRL+  PA+I +F      +R
Sbjct: 63  SVKVKSLSDXTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHR 113


>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM
           superfamily, biosynthetic protein; HET: MP5; 2.10A
           {Caulobacter crescentus} PDB: 3epm_A* 3epn_A* (A:18-201)
          Length = 184

 Score = 26.4 bits (58), Expect = 2.5
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 79  ITANFLRILVANGRLSVLPAIIK 101
           +T  F+R  +A GR  ++PA I 
Sbjct: 161 VTPEFVRQEIARGRA-IIPANIN 182


>2f2u_A RHO-associated protein kinase 2; enzyme-inhibitor complex,
          transferase; HET: M77; 2.40A {Bos taurus} PDB: 2h9v_A*
          2v55_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A*
          (A:157-358)
          Length = 202

 Score = 25.5 bits (54), Expect = 4.3
 Identities = 6/34 (17%), Positives = 10/34 (29%)

Query: 44 MESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC 77
          M   DL   + N     K  +    ++V      
Sbjct: 1  MPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAI 34


>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
          protein-nucleotide complex, ATP-binding, endoplasmic
          reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
          cerevisiae} PDB: 3fbv_A* (A:91-299)
          Length = 209

 Score = 25.1 bits (53), Expect = 5.5
 Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 1/35 (2%)

Query: 43 LMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC 77
          L+ES ++            +  S++  +       
Sbjct: 8  LVESKNVSDENLKL-QKEYNPISLLRQIASGVAHL 41


>3fxz_A Serine/threonine-protein kinase PAK 1; transferase,
          ATP-binding, phosphorylation, allosteric enzyme,
          alternative splicing, apoptosis, cell junction; HET:
          TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 1yhw_A
          1f3m_C 1yhv_A 2hy8_1* (A:99-297)
          Length = 199

 Score = 25.3 bits (54), Expect = 5.6
 Identities = 3/34 (8%), Positives = 9/34 (26%)

Query: 44 MESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC 77
          +    L   +           +V  + ++   F 
Sbjct: 1  LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFL 34


>2c30_A Serine/threonine-protein kinase PAK 6; STE20-like, CRIB
          domain, ATP-binding, transferase, nucleotide-binding,
          phosphorylation, polymorphism; HET: SEP; 1.6A {Homo
          sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2bva_A*
          (A:124-321)
          Length = 198

 Score = 24.5 bits (52), Expect = 8.4
 Identities = 2/34 (5%), Positives = 13/34 (38%)

Query: 44 MESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC 77
          ++   L   +     + +   +V + +++   + 
Sbjct: 1  LQGGALTDIVSQVRLNEEQIATVCEAVLQALAYL 34


>2dn4_A General transcription factor II-I; structural genomics,
          NPPSFA, national project on protein structural and
          functional analyses; NMR {Homo sapiens} (A:)
          Length = 99

 Score = 24.3 bits (53), Expect = 9.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 35 DISRLEALLMESADLRFFIHNPL 57
           I RLE +L+    +RF I    
Sbjct: 62 GIPRLERILLAKERIRFVIKKHE 84


>1nh2_D Transcription initiation factor IIA small chain;
          transcription/DNA; HET: 5IU; 1.90A {Saccharomyces
          cerevisiae} (D:56-121)
          Length = 66

 Score = 24.2 bits (52), Expect = 10.0
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 51 FFIHNPLFSMKDRRSVIDDLVKDAHFCAITANFLRILVANGRLS 94
          F + N   +++D                I+ + LRI+  N + S
Sbjct: 22 FIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIVACNSKKS 65


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.141    0.401 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,325,684
Number of extensions: 54982
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 11
Length of query: 186
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 103
Effective length of database: 2,150,234
Effective search space: 221474102
Effective search space used: 221474102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.5 bits)