BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit
delta [Candidatus Liberibacter asiaticus str. psy62]
(186 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 186
Score = 375 bits (964), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSM 60
MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSM
Sbjct: 1 MSHSFALFSDVPGRYSHSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSM 60
Query: 61 KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRA 120
KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRA
Sbjct: 61 KDRRSVIDDLVKDAHFCAITANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRA 120
Query: 121 FSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKLGC 180
FSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKLGC
Sbjct: 121 FSGLSLLQQNKLGECLEKIVGKTVILDVMEDSALMGGFIVEIGAHQIDASLRTQLLKLGC 180
Query: 181 ILKEVD 186
ILKEVD
Sbjct: 181 ILKEVD 186
>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
Length = 471
Score = 26.2 bits (56), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 119 RAFSGLSLL-QQNKLGECLEKIVGKTVILDVME-DSALMGGFIVEIGAHQIDASLRTQLL 176
R L+LL QQ L + + I K + DS L GF ++ +D LRT
Sbjct: 323 RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPE 382
Query: 177 KLGCI 181
+L +
Sbjct: 383 QLSTL 387
>gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 280
Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 26 EGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVIDDLVKDAHFC-----AIT 80
+G++D S ++ + ++ I FS+K+ VI ++A ++
Sbjct: 73 DGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENE-VISSFARNAPIVKSSNMSLG 131
Query: 81 ANFLRILVANGRLSVLPAIIKSFRAVCMYYRNEVMAFVRAFSGLSLLQQNKLGECL 136
NFL LV +LPA F + M++R + + + SG +LL LGE +
Sbjct: 132 INFLGFLVETAAEYLLPAKDWDFEILEMHHRRK----LDSPSGTALL----LGEAI 179
>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 692
Score = 23.1 bits (48), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 83 FLRILVANGRLSVLPAIIKSFRAVCMYYRN 112
F+R+ V +G +S +PA+I S A + R
Sbjct: 240 FVRLSVGDGLVSQVPALIISLSAAFLVSRT 269
>537021.9.peg.409_1
Length = 242
Score = 22.7 bits (47), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 17 HSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVID 68
+ + +SN+E + ++SD IS AL L FF FS RR +I+
Sbjct: 193 YEILEISNDEDIETLISDIISNRTAL-----KLIFF----FFSYLWRRKIIE 235
>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 442
Score = 22.3 bits (46), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 134 ECLEKIVGKTVILDVMEDSALMG----GFIVEIGAHQI 167
+ L+KI GK +I VME A G ++ GA +I
Sbjct: 24 KVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEI 61
>gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 143
Score = 21.6 bits (44), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 86 ILVANGRLSVLPAIIKSFRAVC 107
IL+ + RLSV P + VC
Sbjct: 112 ILIVSSRLSVQPVTTDEYLEVC 133
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.327 0.141 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,335
Number of Sequences: 1233
Number of extensions: 4273
Number of successful extensions: 15
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 8
length of query: 186
length of database: 328,796
effective HSP length: 69
effective length of query: 117
effective length of database: 243,719
effective search space: 28515123
effective search space used: 28515123
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 36 (18.5 bits)