HHsearch alignment for GI: 254780619 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=99.63 E-value=8.1e-13 Score=117.11 Aligned_cols=341 Identities=21% Similarity=0.253 Sum_probs=186.4
Q ss_pred HHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 70999899975245572234455410235665434466668837899999998752048961998447531579999999
Q gi|254780619|r 159 ASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEI 238 (731)
Q Consensus 159 ~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~l 238 (731)
T Consensus 33 ~l~l~~~ll~~l~~~gf~~---------------------pt~IQ~~~iP~~l~g-----~Dvi~~A~TGsGKT~Af~lP 86 (513)
T COG0513 33 SLGLSPELLQALKDLGFEE---------------------PTPIQLAAIPLILAG-----RDVLGQAQTGTGKTAAFLLP 86 (513)
T ss_pred HCCCCHHHHHHHHHCCCCC---------------------CCHHHHHHCHHHHCC-----CCEEEECCCCCHHHHHHHHH
T ss_conf 6599999999999659899---------------------898999658776369-----99799868987178999999
Q ss_pred HHHHHH---CC-CC-EEEEECCCHHHHHHHHHHHCC---C-CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf 999851---46-84-799715210013445554303---8-976899623557235667899997199739994001211
Q gi|254780619|r 239 VAAVLH---LG-KQ-VLILLPEISLTSAILERFQKR---F-GVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF 309 (731)
Q Consensus 239 i~~~L~---~G-kq-vLiLvPEI~Lt~Q~~~rl~~r---F-~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif 309 (731)
T Consensus 87 ~l~~i~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~g-~~ivVaTPGRll 162 (513)
T COG0513 87 LLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLL 162 (513)
T ss_pred HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH---HHHHCC-CCEEEECCCHHH
T ss_conf 9999740045577756997799999999999999998624584299998998989999---987249-989997960899
Q ss_pred -------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -------0010001367740553210000244322489999975110321000024543246775321234441243223
Q gi|254780619|r 310 -------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRY 382 (731)
Q Consensus 310 -------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~ 382 (731)
T Consensus 163 D~i~~~~l~l~~v~~lVlDEA-Drml--d~gf~~~i~~I~~~~--p~~~qtllfSAT~~~~i~~l~~~--~--l~~p~-- 231 (513)
T COG0513 163 DLIKRGKLDLSGVETLVLDEA-DRML--DMGFIDDIEKILKAL--PPDRQTLLFSATMPDDIRELARR--Y--LNDPV-- 231 (513)
T ss_pred HHHHCCCCCCCCEEEEEECCH-HHHC--CCCCHHHHHHHHHHC--CCCCEEEEEEECCCHHHHHHHHH--H--CCCCC--
T ss_conf 998648855465018996761-7663--887689999999738--97748999982489899999999--7--36880--
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 67654332110222233222454798999999886226551799742220000002356543431014652012113578
Q gi|254780619|r 383 RNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKK 462 (731)
Q Consensus 383 ~~~~~P~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~ 462 (731)
T Consensus 232 ------~i~v-~~~~~----------------~~~~~~i~q~~~~v~~~~---------------------------~k~ 261 (513)
T COG0513 232 ------EIEV-SVEKL----------------ERTLKKIKQFYLEVESEE---------------------------EKL 261 (513)
T ss_pred ------EEEE-CCCCC----------------CCCCCCCEEEEEEECCHH---------------------------HHH
T ss_conf ------7996-43223----------------353004707999808567---------------------------799
Q ss_pred CCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 32000021024465556667874110013542899888852048520001023211358678999998621257657987
Q gi|254780619|r 463 KLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIG 542 (731)
Q Consensus 463 ~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvg 542 (731)
T Consensus 262 ~~L~~ll~~~~~--~~---~---IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~--q~~R~~~l~~F~~g~~~iLVa 329 (513)
T COG0513 262 ELLLKLLKDEDE--GR---V---IVFVRTKRLVEELAESLRKR--GFKVAALHGDLP--QEERDRALEKFKDGELRVLVA 329 (513)
T ss_pred HHHHHHHHCCCC--CE---E---EEEECCHHHHHHHHHHHHHC--CCEEEEEECCCC--HHHHHHHHHHHHCCCCCEEEE
T ss_conf 999999827888--83---9---99957677699999999978--965999738899--889999999997599898998
Q ss_pred EHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE-ECCCCCHHHHHHH
Q ss_conf 04430231134520123300034431024557899999875431102566788689999-3298648889999
Q gi|254780619|r 543 TQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQ-AYQPTHPVMQALV 614 (731)
Q Consensus 543 Tq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~iQ-t~~p~~~~~~~~~ 614 (731)
T Consensus 330 TDvaaRGiDi~~v~~Vi--nyD~p~~~e~y----------vHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~i~ 390 (513)
T COG0513 330 TDVAARGLDIPDVSHVI--NYDLPLDPEDY----------VHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIE 390 (513)
T ss_pred ECHHHCCCCCCCCCEEE--ECCCCCCCCCC----------CCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 06544689966674799--78799980413----------173453434899872799855623499999999