HHsearch alignment for GI: 254780619 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=94.23 E-value=0.41 Score=27.60 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHH-
Q ss_conf 5799999999998514684799715210013445554303897689962355723566789999719973999400121-
Q gi|254780619|r 230 GKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSAL- 308 (731)
Q Consensus 230 GKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAi- 308 (731)
T Consensus 259 ~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~-g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaR 335 (513)
T COG0513 259 EKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKR-GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAAR 335 (513)
T ss_pred HHHHHHHHHHHCC--CCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHC
T ss_conf 7999999998278--8883999957677699999999978-965999738899889999999997599898998065446
Q ss_pred HHHHCCCEEEEE-EECCC-CCCHHCCCCCCCHHHHHH-HHHHHCCCCEECCCC
Q ss_conf 100100013677-40553-210000244322489999-975110321000024
Q gi|254780619|r 309 FLPFKKLGLIVI-DEEHD-ISYKQEEGILYNARDMSI-VRGKIESFPVVLVSA 358 (731)
Q Consensus 309 f~P~~nLglIIv-DEEHd-~sykq~~~pry~aRdvA~-~Ra~~~~~~lilgSA 358 (731)
T Consensus 336 GiDi~~v~~VinyD~p~~~e~yv-------H-R-iGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 336 GLDIPDVSHVINYDLPLDPEDYV-------H-R-IGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred CCCCCCCCEEEECCCCCCCCCCC-------C-C-CCCCCCCCCCCEEEEEECC
T ss_conf 89966674799787999804131-------7-3-4534348998727998556