HHsearch alignment for GI: 254780619 and conserved domain: COG0556

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].

Probab=99.69  E-value=4.9e-15  Score=134.10  Aligned_cols=109  Identities=28%  Similarity=0.406  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHCCC--CCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8998888520485--20001023211358678999998621257657987044302311345201233000344310245
Q gi|254780619|r  495 IERIAEEVCEYFP--LARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADL  572 (731)
Q Consensus       495 te~~~e~l~~~fp--~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~  572 (731)
T Consensus       455 TKkmAEdLT~Yl~e~gikv~YlHSdid-TlE-R~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFL---  529 (663)
T COG0556         455 TKKMAEDLTEYLKELGIKVRYLHSDID-TLE-RVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFL---  529 (663)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCH-HHH-HHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCCCCCC---
T ss_conf             688899999999866964786424403-899-999999975778748985013313478864557988606854443---


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHH
Q ss_conf             578999998754311025667886899993298648889999
Q gi|254780619|r  573 RSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPTHPVMQALV  614 (731)
Q Consensus       573 ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~~~~~~~~~  614 (731)
T Consensus       530 Rs-e---~SLIQtIGRAARN~-~GkvIlYAD~i-T~sM~~Ai  565 (663)
T COG0556         530 RS-E---RSLIQTIGRAARNV-NGKVILYADKI-TDSMQKAI  565 (663)
T ss_pred             CC-C---CHHHHHHHHHHHCC-CCEEEEECCHH-HHHHHHHH
T ss_conf             45-3---25999987886357-97399971011-49999999