HHsearch alignment for GI: 254780619 and conserved domain: COG0556
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].
Probab=95.10 E-value=0.21 Score=29.89 Aligned_cols=118 Identities=22% Similarity=0.349 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 88378999999987520489619984475315799999999998514-68479971521001344555430389768996
Q gi|254780619|r 199 LDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL-GKQVLILLPEISLTSAILERFQKRFGVKPAEW 277 (731)
Q Consensus 199 Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~-GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~ 277 (731)
T Consensus 13 PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT----~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEY 88 (663)
T COG0556 13 PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFT----MANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEY 88 (663)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHH----HHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999867999999988863860258862036883107----9999998689719982555479999999997686764588
Q ss_pred E-CC----------------------CC---CHHHHHHHHHHHCCCCEEEEECCHHHH---HHHCCCEEEEE
Q ss_conf 2-35----------------------57---235667899997199739994001211---00100013677
Q gi|254780619|r 278 H-SS----------------------LS---TSMREKIWRQVARGAISVIVGVRSALF---LPFKKLGLIVI 320 (731)
Q Consensus 278 H-S~----------------------ls---~~eR~~~w~~i~~G~~~IVIGtRSAif---~P~~nLglIIv 320 (731)
T Consensus 89 FVSYYDYYQPEAYvp~tDtyIEKdasiNdeId~mR~SAt~sLleR~DVIVVaSVScIYGlG~P~~y~~~~~~ 160 (663)
T COG0556 89 FVSYYDYYQPEAYVPSTDTYIEKDASINDEIDRLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMMLS 160 (663)
T ss_pred EEEECCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHEEE
T ss_conf 864001468513457777357536506789999999988877504786999987651048986998753799