HHsearch alignment for GI: 254780619 and conserved domain: COG0556

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].
Probab=95.10  E-value=0.21  Score=29.89  Aligned_cols=118  Identities=22%  Similarity=0.349  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             88378999999987520489619984475315799999999998514-68479971521001344555430389768996
Q gi|254780619|r  199 LDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL-GKQVLILLPEISLTSAILERFQKRFGVKPAEW  277 (731)
Q Consensus       199 Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~-GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~  277 (731)
T Consensus        13 PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT----~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEY   88 (663)
T COG0556          13 PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFT----MANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEY   88 (663)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHH----HHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             999867999999988863860258862036883107----9999998689719982555479999999997686764588


Q ss_pred             E-CC----------------------CC---CHHHHHHHHHHHCCCCEEEEECCHHHH---HHHCCCEEEEE
Q ss_conf             2-35----------------------57---235667899997199739994001211---00100013677
Q gi|254780619|r  278 H-SS----------------------LS---TSMREKIWRQVARGAISVIVGVRSALF---LPFKKLGLIVI  320 (731)
Q Consensus       278 H-S~----------------------ls---~~eR~~~w~~i~~G~~~IVIGtRSAif---~P~~nLglIIv  320 (731)
T Consensus        89 FVSYYDYYQPEAYvp~tDtyIEKdasiNdeId~mR~SAt~sLleR~DVIVVaSVScIYGlG~P~~y~~~~~~  160 (663)
T COG0556          89 FVSYYDYYQPEAYVPSTDTYIEKDASINDEIDRLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMMLS  160 (663)
T ss_pred             EEEECCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHEEE
T ss_conf             864001468513457777357536506789999999988877504786999987651048986998753799