HHsearch alignment for GI: 254780619 and conserved domain: COG0610
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=96.51 E-value=0.09 Score=32.65 Aligned_cols=331 Identities=17% Similarity=0.195 Sum_probs=148.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH-HC
Q ss_conf 619984475315799999999998514--684799715210013445554303897689962355723566789999-71
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLHL--GKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQV-AR 295 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~~--GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i-~~ 295 (731)
T Consensus 274 ~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP----KAESTSELKELLED 348 (962)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHC-CC----CCCCHHHHHHHHHC
T ss_conf 72389840698378999999999983659996999967288999999999998876320-44----44579999999865
Q ss_pred CCCEEEEEC----CHHHH----HHHCCCEE-EEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHH
Q ss_conf 997399940----01211----00100013-6774055321000024432248999997511032100002454324677
Q gi|254780619|r 296 GAISVIVGV----RSALF----LPFKKLGL-IVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRV 366 (731)
Q Consensus 296 G~~~IVIGt----RSAif----~P~~nLgl-IIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~ 366 (731)
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~----G-~----~~~~~~~~~~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY----G-E----LAKLLKKALKKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred CCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCC----H-H----HHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 898489997102643333332000478767999864010356----0-7----899999870367089751785640224
Q ss_pred HH---HHHHHH-HHCCCCCCC-CCCCCCC----EECCCCCCCCCCCCCCCHHH--------HHHHHHHHCCCCEEEEEEC
Q ss_conf 53---212344-412432236-7654332----11022223322245479899--------9999886226551799742
Q gi|254780619|r 367 NG---ISRRYH-SVHLSTRYR-NSALPHL----QVIDMRGQTIAQGKSLSPEM--------IDGIRHTLARNEQTLLFLN 429 (731)
Q Consensus 367 ~~---~~g~~~-~~~l~~R~~-~~~~P~i----~ivDm~~~~~~~~~~lS~~l--------~~~i~~~l~~g~qvll~ln 429 (731)
T Consensus 420 ~tt~~~fg~ylh~Y~i~~aI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~ 498 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNL-EFLAMLA 498 (962)
T ss_pred CCHHHHHCCEEEEEECCHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCH
T ss_conf 203555174479986522323576332584031234532001245666669998422799999999987555-6875144
Q ss_pred CCCEEHHC-CCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 22000000-23565434310146520121135783200002102446555666787411001354289988885204852
Q gi|254780619|r 430 RRGYAPLT-LCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPL 508 (731)
Q Consensus 430 RrGya~~~-~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~ 508 (731)
T Consensus 499 ~r~~~~a~~~~~~f~~~~-~~~~kam~V~-~sr~-~---~~~~~~~~~~~~~~~~~~-~~~~-~-~i~~~~~~~~~~~~~ 569 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEE-VFDLKAMVVA-SSRK-V---AVELYEAEIAARLDWHSK-ESLE-G-AIKDYNTEFETDFDK 569 (962)
T ss_pred HHHHHHHHHHHHHHHHHC-CCCCEEEEEE-ECHH-H---HHHHHHHHHHHHHHHHHH-HHHH-H-HHHHHHHHCCCCCHH
T ss_conf 889999999999998611-5583599998-4168-7---877678887751556665-3005-2-899986132232023
Q ss_pred CHHHHCCCCCCCCHHHHHHHHHH--HCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00010232113586789999986--2125765798704430231134520123300034431024557899999875431
Q gi|254780619|r 509 ARISILSSDLEGGGGRLQLQLSA--IAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVT 586 (731)
Q Consensus 509 ~~v~~~d~d~~~~~~~~~~~~~~--~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~ 586 (731)
T Consensus 570 ~~~------~~~~~~~~~~~~~r~~~~~d~~kllIV~dMlLTGFDaP~L~T---mYvDK~Lk~----------H~L~QAi 630 (962)
T COG0610 570 KQS------HAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT---LYVDKPLKY----------HNLIQAI 630 (962)
T ss_pred HHH------HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCE---EEECCCCCC----------CHHHHHH
T ss_conf 445------577777765332321275778768999776204677542012---674455443----------3189999
Q ss_pred HCCCCC
Q ss_conf 102566
Q gi|254780619|r 587 GRAGRF 592 (731)
Q Consensus 587 gRagr~ 592 (731)
T Consensus 631 sRtNR~ 636 (962)
T COG0610 631 SRTNRV 636 (962)
T ss_pred HHHCCC
T ss_conf 886458