HHsearch alignment for GI: 254780619 and conserved domain: COG0610

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=96.51  E-value=0.09  Score=32.65  Aligned_cols=331  Identities=17%  Similarity=0.195  Sum_probs=148.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH-HC
Q ss_conf             619984475315799999999998514--684799715210013445554303897689962355723566789999-71
Q gi|254780619|r  219 AVSLISGVTGSGKTEVYLEIVAAVLHL--GKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQV-AR  295 (731)
Q Consensus       219 ~~~LL~GvTGSGKTEVYl~li~~~L~~--GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i-~~  295 (731)
T Consensus       274 ~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~----~~~s~~~Lk~~l~~  348 (962)
T COG0610         274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP----KAESTSELKELLED  348 (962)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHC-CC----CCCCHHHHHHHHHC
T ss_conf             72389840698378999999999983659996999967288999999999998876320-44----44579999999865


Q ss_pred             CCCEEEEEC----CHHHH----HHHCCCEE-EEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHH
Q ss_conf             997399940----01211----00100013-6774055321000024432248999997511032100002454324677
Q gi|254780619|r  296 GAISVIVGV----RSALF----LPFKKLGL-IVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRV  366 (731)
Q Consensus       296 G~~~IVIGt----RSAif----~P~~nLgl-IIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~  366 (731)
T Consensus       349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~----G-~----~~~~~~~~~~~a~~~gFTGTPi~~~d~  419 (962)
T COG0610         349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY----G-E----LAKLLKKALKKAIFIGFTGTPIFKEDK  419 (962)
T ss_pred             CCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCC----H-H----HHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             898489997102643333332000478767999864010356----0-7----899999870367089751785640224


Q ss_pred             HH---HHHHHH-HHCCCCCCC-CCCCCCC----EECCCCCCCCCCCCCCCHHH--------HHHHHHHHCCCCEEEEEEC
Q ss_conf             53---212344-412432236-7654332----11022223322245479899--------9999886226551799742
Q gi|254780619|r  367 NG---ISRRYH-SVHLSTRYR-NSALPHL----QVIDMRGQTIAQGKSLSPEM--------IDGIRHTLARNEQTLLFLN  429 (731)
Q Consensus       367 ~~---~~g~~~-~~~l~~R~~-~~~~P~i----~ivDm~~~~~~~~~~lS~~l--------~~~i~~~l~~g~qvll~ln  429 (731)
T Consensus       420 ~tt~~~fg~ylh~Y~i~~aI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~  498 (962)
T COG0610         420 DTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNL-EFLAMLA  498 (962)
T ss_pred             CCHHHHHCCEEEEEECCHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCH
T ss_conf             203555174479986522323576332584031234532001245666669998422799999999987555-6875144


Q ss_pred             CCCEEHHC-CCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCC
Q ss_conf             22000000-23565434310146520121135783200002102446555666787411001354289988885204852
Q gi|254780619|r  430 RRGYAPLT-LCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPL  508 (731)
Q Consensus       430 RrGya~~~-~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~  508 (731)
T Consensus       499 ~r~~~~a~~~~~~f~~~~-~~~~kam~V~-~sr~-~---~~~~~~~~~~~~~~~~~~-~~~~-~-~i~~~~~~~~~~~~~  569 (962)
T COG0610         499 VRLIRAAKDIYDHFKKEE-VFDLKAMVVA-SSRK-V---AVELYEAEIAARLDWHSK-ESLE-G-AIKDYNTEFETDFDK  569 (962)
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCCEEEEEE-ECHH-H---HHHHHHHHHHHHHHHHHH-HHHH-H-HHHHHHHHCCCCCHH
T ss_conf             889999999999998611-5583599998-4168-7---877678887751556665-3005-2-899986132232023


Q ss_pred             CHHHHCCCCCCCCHHHHHHHHHH--HCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00010232113586789999986--2125765798704430231134520123300034431024557899999875431
Q gi|254780619|r  509 ARISILSSDLEGGGGRLQLQLSA--IAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVT  586 (731)
Q Consensus       509 ~~v~~~d~d~~~~~~~~~~~~~~--~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~  586 (731)
T Consensus       570 ~~~------~~~~~~~~~~~~~r~~~~~d~~kllIV~dMlLTGFDaP~L~T---mYvDK~Lk~----------H~L~QAi  630 (962)
T COG0610         570 KQS------HAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT---LYVDKPLKY----------HNLIQAI  630 (962)
T ss_pred             HHH------HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCE---EEECCCCCC----------CHHHHHH
T ss_conf             445------577777765332321275778768999776204677542012---674455443----------3189999


Q ss_pred             HCCCCC
Q ss_conf             102566
Q gi|254780619|r  587 GRAGRF  592 (731)
Q Consensus       587 gRagr~  592 (731)
T Consensus       631 sRtNR~  636 (962)
T COG0610         631 SRTNRV  636 (962)
T ss_pred             HHHCCC
T ss_conf             886458