HHsearch alignment for GI: 254780619 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=99.57 E-value=3.9e-13 Score=119.51 Aligned_cols=367 Identities=19% Similarity=0.174 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHCCCC---CEEEE
Q ss_conf 378999999987520489619984475315799999999998514-68479971521001344555430389---76899
Q gi|254780619|r 201 KNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL-GKQVLILLPEISLTSAILERFQKRFG---VKPAE 276 (731)
Q Consensus 201 ~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~-GkqvLiLvPEI~Lt~Q~~~rl~~rF~---~~v~v 276 (731)
T Consensus 18 ~YQ~~i~a~al------~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 18 LYQLNIAAKAL------FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred HHHHHHHHHHH------HCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHEEE
T ss_conf 99999999986------448389952875079999999999987458848996589517999999999985898433231
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 623557235667899997199739994001211-------0010001367740553210000244322489999975110
Q gi|254780619|r 277 WHSSLSTSMREKIWRQVARGAISVIVGVRSALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIE 349 (731)
Q Consensus 277 ~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~ 349 (731)
T Consensus 92 ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAv------GnyAYv~Va~~y~~~~ 160 (542)
T COG1111 92 LTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAV------GNYAYVFVAKEYLRSA 160 (542)
T ss_pred ECCCCCHHHHHHHHH-----HCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCC------CCCHHHHHHHHHHHHC
T ss_conf 117778688999875-----17789956387776876176676780589862355413------7606999999999825
Q ss_pred CCCEECC-CCCC--CHHHHHHHHHH-HHHHHCCC-CC-CCCC---CCCCCEECC--CCCC------------------CC
Q ss_conf 3210000-2454--32467753212-34441243-22-3676---543321102--2223------------------32
Q gi|254780619|r 350 SFPVVLV-SATP--SIESRVNGISR-RYHSVHLS-TR-YRNS---ALPHLQVID--MRGQ------------------TI 400 (731)
Q Consensus 350 ~~~lilg-SATP--Sles~~~~~~g-~~~~~~l~-~R-~~~~---~~P~i~ivD--m~~~------------------~~ 400 (731)
T Consensus 161 k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~ 240 (542)
T COG1111 161 KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLK 240 (542)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68437987238999879999999837954289845788517775140424899636858999999999999999999999
Q ss_pred CCCCC-----CCH-HHHHHHHHHHC--CCCEEEEEECCC---CEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCC-----
Q ss_conf 22454-----798-99999988622--655179974222---000000235654343101465201211357832-----
Q gi|254780619|r 401 AQGKS-----LSP-EMIDGIRHTLA--RNEQTLLFLNRR---GYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKL----- 464 (731)
Q Consensus 401 ~~~~~-----lS~-~l~~~i~~~l~--~g~qvll~lnRr---Gya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l----- 464 (731)
T Consensus 241 ~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~------~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 241 ELGVIESSSPVSKKDLLELRQIRLIMAKNE------DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HCCCEECCCCCCHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 769532357310768999999899863576------17888999999999888899999985086999999999998750
Q ss_pred ------------------E---E---CHHHCCCCCCC----CCC-----CCCCC-CEECCCCCCHHHHHHHHHHCCCCCH
Q ss_conf ------------------0---0---00210244655----566-----67874-1100135428998888520485200
Q gi|254780619|r 465 ------------------Y---C---HQCGHSAIYSQ----SCV-----VCGSS-GKMIACGFGIERIAEEVCEYFPLAR 510 (731)
Q Consensus 465 ------------------~---C---h~Cg~~~~~~~----~Cp-----~Cg~~-~~l~~~G~Gte~~~e~l~~~fp~~~ 510 (731)
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCE
T ss_conf 35207789875382047999999974003688961899999999997238985599996147589999999985287520
Q ss_pred HHHC----CCCCCC--CHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0102----321135--8678999998621257657987044302311345201233000344310245578999998754
Q gi|254780619|r 511 ISIL----SSDLEG--GGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQ 584 (731)
Q Consensus 511 v~~~----d~d~~~--~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~q 584 (731)
T Consensus 395 -~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp--------SeIR~----IQ 461 (542)
T COG1111 395 -VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP--------SEIRS----IQ 461 (542)
T ss_pred -EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCC--------HHHHH----HH
T ss_conf -688611454556665888999999998657851899812322467887656799956885--------78899----98
Q ss_pred HHHCCCCCCCCCEEEEE-ECC
Q ss_conf 31102566788689999-329
Q gi|254780619|r 585 VTGRAGRFGLKSLGLIQ-AYQ 604 (731)
Q Consensus 585 v~gRagr~~~~g~v~iQ-t~~ 604 (731)
T Consensus 462 R~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 462 RKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred HHCCCCCC-CCCEEEEEEECC
T ss_conf 60744557-797499999658