HHsearch alignment for GI: 254780619 and conserved domain: COG1111

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=99.57  E-value=3.9e-13  Score=119.51  Aligned_cols=367  Identities=19%  Similarity=0.174  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHCCCC---CEEEE
Q ss_conf             378999999987520489619984475315799999999998514-68479971521001344555430389---76899
Q gi|254780619|r  201 KNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL-GKQVLILLPEISLTSAILERFQKRFG---VKPAE  276 (731)
Q Consensus       201 ~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~-GkqvLiLvPEI~Lt~Q~~~rl~~rF~---~~v~v  276 (731)
T Consensus        18 ~YQ~~i~a~al------~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~   91 (542)
T COG1111          18 LYQLNIAAKAL------FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA   91 (542)
T ss_pred             HHHHHHHHHHH------HCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHEEE
T ss_conf             99999999986------448389952875079999999999987458848996589517999999999985898433231


Q ss_pred             EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             623557235667899997199739994001211-------0010001367740553210000244322489999975110
Q gi|254780619|r  277 WHSSLSTSMREKIWRQVARGAISVIVGVRSALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIE  349 (731)
Q Consensus       277 ~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~  349 (731)
T Consensus        92 ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAv------GnyAYv~Va~~y~~~~  160 (542)
T COG1111          92 LTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAV------GNYAYVFVAKEYLRSA  160 (542)
T ss_pred             ECCCCCHHHHHHHHH-----HCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCC------CCCHHHHHHHHHHHHC
T ss_conf             117778688999875-----17789956387776876176676780589862355413------7606999999999825


Q ss_pred             CCCEECC-CCCC--CHHHHHHHHHH-HHHHHCCC-CC-CCCC---CCCCCEECC--CCCC------------------CC
Q ss_conf             3210000-2454--32467753212-34441243-22-3676---543321102--2223------------------32
Q gi|254780619|r  350 SFPVVLV-SATP--SIESRVNGISR-RYHSVHLS-TR-YRNS---ALPHLQVID--MRGQ------------------TI  400 (731)
Q Consensus       350 ~~~lilg-SATP--Sles~~~~~~g-~~~~~~l~-~R-~~~~---~~P~i~ivD--m~~~------------------~~  400 (731)
T Consensus       161 k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~  240 (542)
T COG1111         161 KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLK  240 (542)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68437987238999879999999837954289845788517775140424899636858999999999999999999999


Q ss_pred             CCCCC-----CCH-HHHHHHHHHHC--CCCEEEEEECCC---CEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCC-----
Q ss_conf             22454-----798-99999988622--655179974222---000000235654343101465201211357832-----
Q gi|254780619|r  401 AQGKS-----LSP-EMIDGIRHTLA--RNEQTLLFLNRR---GYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKL-----  464 (731)
Q Consensus       401 ~~~~~-----lS~-~l~~~i~~~l~--~g~qvll~lnRr---Gya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l-----  464 (731)
T Consensus       241 ~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~------~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~  314 (542)
T COG1111         241 ELGVIESSSPVSKKDLLELRQIRLIMAKNE------DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT  314 (542)
T ss_pred             HCCCEECCCCCCHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf             769532357310768999999899863576------17888999999999888899999985086999999999998750


Q ss_pred             ------------------E---E---CHHHCCCCCCC----CCC-----CCCCC-CEECCCCCCHHHHHHHHHHCCCCCH
Q ss_conf             ------------------0---0---00210244655----566-----67874-1100135428998888520485200
Q gi|254780619|r  465 ------------------Y---C---HQCGHSAIYSQ----SCV-----VCGSS-GKMIACGFGIERIAEEVCEYFPLAR  510 (731)
Q Consensus       465 ------------------~---C---h~Cg~~~~~~~----~Cp-----~Cg~~-~~l~~~G~Gte~~~e~l~~~fp~~~  510 (731)
T Consensus       315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~  394 (542)
T COG1111         315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR  394 (542)
T ss_pred             CCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCE
T ss_conf             35207789875382047999999974003688961899999999997238985599996147589999999985287520


Q ss_pred             HHHC----CCCCCC--CHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0102----321135--8678999998621257657987044302311345201233000344310245578999998754
Q gi|254780619|r  511 ISIL----SSDLEG--GGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQ  584 (731)
Q Consensus       511 v~~~----d~d~~~--~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~q  584 (731)
T Consensus       395 -~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp--------SeIR~----IQ  461 (542)
T COG1111         395 -VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP--------SEIRS----IQ  461 (542)
T ss_pred             -EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCC--------HHHHH----HH
T ss_conf             -688611454556665888999999998657851899812322467887656799956885--------78899----98


Q ss_pred             HHHCCCCCCCCCEEEEE-ECC
Q ss_conf             31102566788689999-329
Q gi|254780619|r  585 VTGRAGRFGLKSLGLIQ-AYQ  604 (731)
Q Consensus       585 v~gRagr~~~~g~v~iQ-t~~  604 (731)
T Consensus       462 R~GRTGR~-r~Grv~vLvt~g  481 (542)
T COG1111         462 RKGRTGRK-RKGRVVVLVTEG  481 (542)
T ss_pred             HHCCCCCC-CCCEEEEEEECC
T ss_conf             60744557-797499999658