HHsearch alignment for GI: 254780619 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=96.61 E-value=0.018 Score=38.08 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=91.1
Q ss_pred ECCCCCCHHHHHHHHHHCCCCCHHH--HCCCCCCCCHHHHHHHHHHHCCCCCCEEEEE-HHHCCCCCCCCCCHHHHHHHH
Q ss_conf 0013542899888852048520001--0232113586789999986212576579870-443023113452012330003
Q gi|254780619|r 488 MIACGFGIERIAEEVCEYFPLARIS--ILSSDLEGGGGRLQLQLSAIAKGEIDIIIGT-QLVAKGHNFPRMSLVGVVDGD 564 (731)
Q Consensus 488 l~~~G~Gte~~~e~l~~~fp~~~v~--~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgT-q~i~kg~~fp~v~lv~il~aD 564 (731)
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF--~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlII-DEE 725 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRF--RSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLII-DEE 725 (1139)
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCEEEEEECCC--CCHHHHHHHHHHHHCCCCCEEEECHHHHCCCCEEECCCEEEE-ECH
T ss_conf 92607868998999998733898258886055--788999999999856984589963176478967704764897-443
Q ss_pred HHHHHHHHHHHH--------------------HHHHH-HHHHHHCCCCC-CCCCEEEEEECCCCC--HHHHHH-----HH
Q ss_conf 443102455789--------------------99998-75431102566-788689999329864--888999-----95
Q gi|254780619|r 565 LGLTNADLRSSE--------------------RTFQL-LSQVTGRAGRF-GLKSLGLIQAYQPTH--PVMQAL-----VS 615 (731)
Q Consensus 565 ~~l~~pd~ra~E--------------------~~~ql-l~qv~gRagr~-~~~g~v~iQt~~p~~--~~~~~~-----~~ 615 (731)
T Consensus 726 qRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~R 802 (1139)
T COG1197 726 QRFGV---KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLR 802 (1139)
T ss_pred HHCCC---CHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 53271---178999877505728974178875447777744303311147998772128887158828999999998715
Q ss_pred CC--------HHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 89--------799999999999981888801189998845998999999999998
Q gi|254780619|r 616 GD--------ADSFYESEIRARESVNLPPFGRLAAVIISGTKYQEVENYAYNLKE 662 (731)
Q Consensus 616 ~d--------~~~f~~~el~~R~~~~~PPf~~~~~i~~~~~~~~~~~~~~~~~~~ 662 (731)
T Consensus 803 gGQvfYv~NrV~~Ie~~~---~~L~~LVPEarI~-vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKA---ERLRELVPEARIA-VAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred CCEEEEEECCCCCHHHHH---HHHHHHCCCEEEE-EEECCCCHHHHHHHHHHHHC
T ss_conf 987999943331299999---9999859846888-85258888999999999972