HHsearch alignment for GI: 254780619 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1597.93 Aligned_cols=714 Identities=45% Similarity=0.731 Sum_probs=659.8
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCC-CCCCEEEEECCCCEEEEEEEEECCCCCCCCCHHCCCHHHHCCC-CCCCHHHHHH
Q ss_conf 6777631778786616378888884-8875899618996899999982488767880111418884066-8999899999
Q gi|254780619|r 14 SRVIILLLQAVSGPYIYSVPSAMKV-ELGSIVRVPLRSRTVLGIVWYNSEEKYKIDSLKLRPIEYVFDC-PPLSRQMCEF 91 (731)
Q Consensus 14 ~rV~Vllp~pL~~~FtY~vP~~l~i-~iG~RV~VPFg~r~~~GiVv~~~~~~~~~~~~kLK~I~~VlD~-~~L~~~ll~L 91 (731)
T Consensus 2 ~~~~V~v~vp~~~~fdY~~p~~l~~~~~G~rV~VPfg~~~~~GiV~~~~~~~~-~~~~klk~i~~v~d~~p~l~~~~~~L 80 (730)
T COG1198 2 RYAEVAVPVPLLRPFDYLIPEGLEPDQPGSRVRVPFGGRLVVGIVVELSSESD-VDGRKLKEIERVLDTEPVLTPELLRL 80 (730)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCCC-CCHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 36999953776765234588666778986489997699248999998336787-65665331676506777889899999
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHH-----CC----CCCC-CCCCHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 9999853088788999985753223333200000-----13----3334-458688999999988098878788887709
Q gi|254780619|r 92 VKWVADYTFSPMGLVARMVVSALSETEKMEEKIQ-----FT----GIFP-RINTVARLRVLDKIKDGKIWEKRDLIRASQ 161 (731)
Q Consensus 92 ~~wiA~yY~~plG~vLk~aLP~~~k~~~~~~~~~-----~~----~~~~-~~~~~~~~~~l~~l~~~~~~~~~el~~~~~ 161 (731)
T Consensus 81 ~~w~s~yy~~~~g~vl~~~lP~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kq~~~l~~l~~~~~~~~~~l~~~~~ 160 (730)
T COG1198 81 IEWAADYYLSPLGDVLRLALPVLLRQGYAKPSLPVLFYRLTERGRAALPDLKRAKKQARVLEALLQGGEWTRSALAHAAG 160 (730)
T ss_pred HHHHHHHHCCCHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCC
T ss_conf 99999764576889999867634305655555403778763010110433112356999999987077322145543213
Q ss_pred CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 998999752455722344554102356654344-6666883789999999875204896199844753157999999999
Q gi|254780619|r 162 VSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYF-SLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVA 240 (731)
Q Consensus 162 ~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~-~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~ 240 (731)
T Consensus 161 ~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~-~~~~~~Ll~GvTGSGKTEvYl~~i~ 239 (730)
T COG1198 161 VSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSL-GGFAPFLLDGVTGSGKTEVYLEAIA 239 (730)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 038989888765735653036777522346565431103889999999999750-5666536767778858999999999
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCEEEEE
Q ss_conf 98514684799715210013445554303897689962355723566789999719973999400121100100013677
Q gi|254780619|r 241 AVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVI 320 (731)
Q Consensus 241 ~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P~~nLglIIv 320 (731)
T Consensus 240 ~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIv 319 (730)
T COG1198 240 KVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIV 319 (730)
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCCHHHCCEEEE
T ss_conf 99975987999956534569999999998678745314657927899999998559715999712233072312576997
Q ss_pred EECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 40553210000244322489999975110321000024543246775321234441243223676543321102222332
Q gi|254780619|r 321 DEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTI 400 (731)
Q Consensus 321 DEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~ivDm~~~~~ 400 (731)
T Consensus 320 DEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~ 399 (730)
T COG1198 320 DEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPL 399 (730)
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCCC
T ss_conf 02456432477777767899999998860998898268877899986653855899703545556787625873566655
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCC
Q ss_conf 22454798999999886226551799742220000002356543431014652012113578320000210244655566
Q gi|254780619|r 401 AQGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCV 480 (731)
Q Consensus 401 ~~~~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp 480 (731)
T Consensus 400 ~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp 479 (730)
T COG1198 400 ETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCP 479 (730)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
T ss_conf 46775799999999999842986899971677654004256898024899995127864798067077999899887798
Q ss_pred CCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHH
Q ss_conf 67874110013542899888852048520001023211358678999998621257657987044302311345201233
Q gi|254780619|r 481 VCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGV 560 (731)
Q Consensus 481 ~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~i 560 (731)
T Consensus 480 ~Cgs~-~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgv 558 (730)
T COG1198 480 ECGSE-HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGV 558 (730)
T ss_pred CCCCC-EEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCCEEEEE
T ss_conf 99997-36996461999999999878999479984666664356899999975799886634166642788666318999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHE
Q ss_conf 00034431024557899999875431102566788689999329864888999958979999999999998188880118
Q gi|254780619|r 561 VDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRL 640 (731)
Q Consensus 561 l~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~~ 640 (731)
T Consensus 559 l~aD~~L~~~DfRAsEr~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l 638 (730)
T COG1198 559 LDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRL 638 (730)
T ss_pred EECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 96314315888435789999999997553267889869999679985799999866999999999998886189970654
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHCC--CCCCCEEECCCCCHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9998845998999999999998573--43884998176752688588237999998099389999999999864210378
Q gi|254780619|r 641 AAVIISGTKYQEVENYAYNLKEHAP--RSSDIVVFGPAESPLFMVRGRYRFRLLIHGKRNSNLQGFFSQMYDNTIKRSNA 718 (731)
Q Consensus 641 ~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~GP~~~~~~k~~~~~r~~~~ik~~~~~~l~~~l~~~~~~~~~~~~~ 718 (731)
T Consensus 639 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLGP~~a~~~r~~g~yR~qiLl~~~~~~~L~~~l~~~~~~~~~~~~~ 718 (730)
T COG1198 639 AAVIASAKNEEKALEFARALRELLKEALPVDVEVLGPAPAPLAKLAGRYRYQILLKSPSRADLQKLLRAWLAVLPKRSGK 718 (730)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 46673378989999999999999986275565046887562677378558999981685778999999999863034675
Q ss_pred CEEEEEECCHHH
Q ss_conf 689997068021
Q gi|254780619|r 719 LRVQFDIDPQNF 730 (731)
Q Consensus 719 ~~~~iDvDP~~~ 730 (731)
T Consensus 719 v~~~iDiDP~~~ 730 (730)
T COG1198 719 VRVSIDIDPQSF 730 (730)
T ss_pred EEEEEECCCCCC
T ss_conf 169994489879