HHsearch alignment for GI: 254780619 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=99.45 E-value=8e-11 Score=101.87 Aligned_cols=303 Identities=21% Similarity=0.240 Sum_probs=188.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH-HHHHHC-------CCCEEEEECCCHHHHHHHHHHH-
Q ss_conf 6688378999999987520489619984475315799999999-998514-------6847997152100134455543-
Q gi|254780619|r 197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIV-AAVLHL-------GKQVLILLPEISLTSAILERFQ- 267 (731)
Q Consensus 197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li-~~~L~~-------GkqvLiLvPEI~Lt~Q~~~rl~- 267 (731)
T Consensus 21 ~~~t~~Q~~a~~~i~~G-----~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 21 TSLTPPQRYAIPEIHSG-----ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred CCCCHHHHHHHHHHHCC-----CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 89987899999998589-----8469986899973799999999999860688888856999957078887899999999
Q ss_pred --CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHH---HHH------HCCCEEEEEEECCCCCCHHCCCCCC
Q ss_conf --03897689962355723566789999719973999400121---100------1000136774055321000024432
Q gi|254780619|r 268 --KRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSAL---FLP------FKKLGLIVIDEEHDISYKQEEGILY 336 (731)
Q Consensus 268 --~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAi---f~P------~~nLglIIvDEEHd~sykq~~~pry 336 (731)
T Consensus 96 ~~~~~G~~v~vRhGDT~~~er~r----~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~----~sKRG 167 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQSEKQK----MLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA----ESKRG 167 (814)
T ss_pred HHHHCCCCCCEECCCCCHHHHHH----CCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHHHH----CCCCC
T ss_conf 99975984444228788677630----46999968995834899983688899986078099951254543----45653
Q ss_pred CHHHHHHHHHHHCC--CCEECCCCCCCH-H--HHHHHHHH-HHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHH
Q ss_conf 24899999751103--210000245432-4--67753212-344412432236765433211022223322245479899
Q gi|254780619|r 337 NARDMSIVRGKIES--FPVVLVSATPSI-E--SRVNGISR-RYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEM 410 (731)
Q Consensus 337 ~aRdvA~~Ra~~~~--~~lilgSATPSl-e--s~~~~~~g-~~~~~~l~~R~~~~~~P~i~ivDm~~~~~~~~~~lS~~l 410 (731)
T Consensus 168 ~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~----~~~~k~~~i~v~~p~~~~~~~~-~~~~~~ 242 (814)
T COG1201 168 VQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVD----VSAAKKLEIKVISPVEDLIYDE-ELWAAL 242 (814)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHCCCCCCEEEEE----CCCCCCCEEEEEECCCCCCCCC-CHHHHH
T ss_conf 13433299998517553797540215888999998547898429997----4567753179980477500026-246789
Q ss_pred HHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECC
Q ss_conf 99998862265517997422200000023565434310146520121135783200002102446555666787411001
Q gi|254780619|r 411 IDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIA 490 (731)
Q Consensus 411 ~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~ 490 (731)
T Consensus 243 ~~~i~~~v~~~~ttLIF~NTR~~a-------------------------------------------------------- 266 (814)
T COG1201 243 YERIAELVKKHRTTLIFTNTRSGA-------------------------------------------------------- 266 (814)
T ss_pred HHHHHHHHHHCCCEEEEEECHHHH--------------------------------------------------------
T ss_conf 999999996168589997272789--------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 35428998888520485200010232113586789999986212576579870443023113452012330003443102
Q gi|254780619|r 491 CGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNA 570 (731)
Q Consensus 491 ~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~p 570 (731)
T Consensus 267 -----E~l~~~L~~~~~-~~i-~~HHgSl-Sre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP------ 332 (814)
T COG1201 267 -----ERLAFRLKKLGP-DII-EVHHGSL-SRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSP------ 332 (814)
T ss_pred -----HHHHHHHHHHCC-CCE-EEECCCC-CHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCEEEEEECCC------
T ss_conf -----999999987268-755-6531666-57789999999866886299980642205024774299981793------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 45578999998754311025667
Q gi|254780619|r 571 DLRSSERTFQLLSQVTGRAGRFG 593 (731)
Q Consensus 571 d~ra~E~~~qll~qv~gRagr~~ 593 (731)
T Consensus 333 ------~sV~r~lQRiGRsgHr~ 349 (814)
T COG1201 333 ------KSVNRFLQRIGRAGHRL 349 (814)
T ss_pred ------HHHHHHHHHCCCCCCCC
T ss_conf ------88888868503146656