HHsearch alignment for GI: 254780619 and conserved domain: COG1201

>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=99.45  E-value=8e-11  Score=101.87  Aligned_cols=303  Identities=21%  Similarity=0.240  Sum_probs=188.6

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH-HHHHHC-------CCCEEEEECCCHHHHHHHHHHH-
Q ss_conf             6688378999999987520489619984475315799999999-998514-------6847997152100134455543-
Q gi|254780619|r  197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIV-AAVLHL-------GKQVLILLPEISLTSAILERFQ-  267 (731)
Q Consensus       197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li-~~~L~~-------GkqvLiLvPEI~Lt~Q~~~rl~-  267 (731)
T Consensus        21 ~~~t~~Q~~a~~~i~~G-----~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~   95 (814)
T COG1201          21 TSLTPPQRYAIPEIHSG-----ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE   95 (814)
T ss_pred             CCCCHHHHHHHHHHHCC-----CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             89987899999998589-----8469986899973799999999999860688888856999957078887899999999


Q ss_pred             --CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHH---HHH------HCCCEEEEEEECCCCCCHHCCCCCC
Q ss_conf             --03897689962355723566789999719973999400121---100------1000136774055321000024432
Q gi|254780619|r  268 --KRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSAL---FLP------FKKLGLIVIDEEHDISYKQEEGILY  336 (731)
Q Consensus       268 --~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAi---f~P------~~nLglIIvDEEHd~sykq~~~pry  336 (731)
T Consensus        96 ~~~~~G~~v~vRhGDT~~~er~r----~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~----~sKRG  167 (814)
T COG1201          96 PLRELGIEVAVRHGDTPQSEKQK----MLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA----ESKRG  167 (814)
T ss_pred             HHHHCCCCCCEECCCCCHHHHHH----CCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHHHH----CCCCC
T ss_conf             99975984444228788677630----46999968995834899983688899986078099951254543----45653


Q ss_pred             CHHHHHHHHHHHCC--CCEECCCCCCCH-H--HHHHHHHH-HHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHH
Q ss_conf             24899999751103--210000245432-4--67753212-344412432236765433211022223322245479899
Q gi|254780619|r  337 NARDMSIVRGKIES--FPVVLVSATPSI-E--SRVNGISR-RYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEM  410 (731)
Q Consensus       337 ~aRdvA~~Ra~~~~--~~lilgSATPSl-e--s~~~~~~g-~~~~~~l~~R~~~~~~P~i~ivDm~~~~~~~~~~lS~~l  410 (731)
T Consensus       168 ~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~----~~~~k~~~i~v~~p~~~~~~~~-~~~~~~  242 (814)
T COG1201         168 VQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVD----VSAAKKLEIKVISPVEDLIYDE-ELWAAL  242 (814)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHCCCCCCEEEEE----CCCCCCCEEEEEECCCCCCCCC-CHHHHH
T ss_conf             13433299998517553797540215888999998547898429997----4567753179980477500026-246789


Q ss_pred             HHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECC
Q ss_conf             99998862265517997422200000023565434310146520121135783200002102446555666787411001
Q gi|254780619|r  411 IDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIA  490 (731)
Q Consensus       411 ~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~  490 (731)
T Consensus       243 ~~~i~~~v~~~~ttLIF~NTR~~a--------------------------------------------------------  266 (814)
T COG1201         243 YERIAELVKKHRTTLIFTNTRSGA--------------------------------------------------------  266 (814)
T ss_pred             HHHHHHHHHHCCCEEEEEECHHHH--------------------------------------------------------
T ss_conf             999999996168589997272789--------------------------------------------------------


Q ss_pred             CCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             35428998888520485200010232113586789999986212576579870443023113452012330003443102
Q gi|254780619|r  491 CGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNA  570 (731)
Q Consensus       491 ~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~p  570 (731)
T Consensus       267 -----E~l~~~L~~~~~-~~i-~~HHgSl-Sre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP------  332 (814)
T COG1201         267 -----ERLAFRLKKLGP-DII-EVHHGSL-SRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSP------  332 (814)
T ss_pred             -----HHHHHHHHHHCC-CCE-EEECCCC-CHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCEEEEEECCC------
T ss_conf             -----999999987268-755-6531666-57789999999866886299980642205024774299981793------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             45578999998754311025667
Q gi|254780619|r  571 DLRSSERTFQLLSQVTGRAGRFG  593 (731)
Q Consensus       571 d~ra~E~~~qll~qv~gRagr~~  593 (731)
T Consensus       333 ------~sV~r~lQRiGRsgHr~  349 (814)
T COG1201         333 ------KSVNRFLQRIGRAGHRL  349 (814)
T ss_pred             ------HHHHHHHHHCCCCCCCC
T ss_conf             ------88888868503146656