HHsearch alignment for GI: 254780619 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=99.73 E-value=3.7e-16 Score=142.64 Aligned_cols=379 Identities=23% Similarity=0.213 Sum_probs=220.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHH--CCCCCEE
Q ss_conf 6883789999999875204896199844753157999999999985146-847997152100134455543--0389768
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLG-KQVLILLPEISLTSAILERFQ--KRFGVKP 274 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~G-kqvLiLvPEI~Lt~Q~~~rl~--~rF~~~v 274 (731)
T Consensus 31 el~~~qq~av~~~~~~-~---~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLLS-D---ENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred HHHHHHHHHHHCCCCC-C---CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 7557899874111257-9---86799767888669999999999998559838999075999999999866688659779
Q ss_pred EEEECCCCCH-HHHHHHHHHHCCCCEEEEECCHHHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHH
Q ss_conf 9962355723-5667899997199739994001211-------0010001367740553210000244322489999975
Q gi|254780619|r 275 AEWHSSLSTS-MREKIWRQVARGAISVIVGVRSALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRG 346 (731)
Q Consensus 275 ~v~HS~ls~~-eR~~~w~~i~~G~~~IVIGtRSAif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra 346 (731)
T Consensus 107 ~~~TgD~~~~~~~l--------~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d-~~RG~~lE~-iv~r~~~ 176 (766)
T COG1204 107 GISTGDYDLDDERL--------ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGD-RTRGPVLES-IVARMRR 176 (766)
T ss_pred EEECCCCCCCHHHH--------CCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCC-CCCCCEEHH-HHHHHHH
T ss_conf 99648865553341--------4588799746786676506753334016899942101487-565864022-7988885
Q ss_pred HHCCCCEECCCCC-CCHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCEECC-CCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 1103210000245-4324677532123444124322367--6543321102-2223322245479899999988622655
Q gi|254780619|r 347 KIESFPVVLVSAT-PSIESRVNGISRRYHSVHLSTRYRN--SALPHLQVID-MRGQTIAQGKSLSPEMIDGIRHTLARNE 422 (731)
Q Consensus 347 ~~~~~~lilgSAT-PSles~~~~~~g~~~~~~l~~R~~~--~~~P~i~ivD-m~~~~~~~~~~lS~~l~~~i~~~l~~g~ 422 (731)
T Consensus 177 ~~~~~rivgLSATlpN~~evA~wL~a~~~--~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~ 254 (766)
T COG1204 177 LNELIRIVGLSATLPNAEEVADWLNAKLV--ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGG 254 (766)
T ss_pred HCCCEEEEEEEEECCCHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 27551798873116888999998588355--5677886201577653179871476434542105799999999985698
Q ss_pred EEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECC---CCCCHHHHH
Q ss_conf 17997422200000023565434310146520121135783200002102446555666787411001---354289988
Q gi|254780619|r 423 QTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIA---CGFGIERIA 499 (731)
Q Consensus 423 qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~---~G~Gte~~~ 499 (731)
T Consensus 255 qvLvFv~sR~~a~~~A--------~~l~~~~~~~~--~~~~~-------------~~~~~~a~-~~~~~~~~~~~~~~l~ 310 (766)
T COG1204 255 QVLVFVHSRKEAEKTA--------KKLRIKMSATL--SDDEK-------------IVLDEGAS-PILIPETPTSEDEELA 310 (766)
T ss_pred EEEEEEECCCHHHHHH--------HHHHHHHHHCC--CHHHH-------------HHCCCCCC-CCCCCCCCCCCHHHHH
T ss_conf 6999974572599999--------99999875127--71654-------------30122344-2112355432217899
Q ss_pred HHHHH--CCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88520--4852000102321135867899999862125765798704430231134520123300034431024557899
Q gi|254780619|r 500 EEVCE--YFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSER 577 (731)
Q Consensus 500 e~l~~--~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~ 577 (731)
T Consensus 311 e~v~~GvafHhAGL~~~~R---------~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~-VIIk~~--~~y~~-~~g~~~ 377 (766)
T COG1204 311 ELVLRGVAFHHAGLPREDR---------QLVEDAFRKGKIKVLVSTPTLAAGVNLPART-VIIKDT--RRYDP-KGGIVD 377 (766)
T ss_pred HHHHHCCCCCCCCCCHHHH---------HHHHHHHHCCCCEEEEECHHHHHHCCCCCEE-EEEEEE--EEECC-CCCEEE
T ss_conf 9997275411268978899---------9999998669854999545776216886328-999103--87757-788477
Q ss_pred H-HHHHHHHHHCCCCCC--CCCEEEEEECCC--CCHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9-998754311025667--886899993298--648889999589799999999999
Q gi|254780619|r 578 T-FQLLSQVTGRAGRFG--LKSLGLIQAYQP--THPVMQALVSGDADSFYESEIRAR 629 (731)
Q Consensus 578 ~-~qll~qv~gRagr~~--~~g~v~iQt~~p--~~~~~~~~~~~d~~~f~~~el~~R 629 (731)
T Consensus 378 i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~ 434 (766)
T COG1204 378 IPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDEL 434 (766)
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHCCCC
T ss_conf 764148655676799875777827999358631558998752158626887652021