HHsearch alignment for GI: 254780619 and conserved domain: COG1435
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism].
Probab=94.60 E-value=0.3 Score=28.61 Aligned_cols=105 Identities=25% Similarity=0.336 Sum_probs=65.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCE
Q ss_conf 19984475315799999999998514684799715210013445554303897689962355723566789999719973
Q gi|254780619|r 220 VSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAIS 299 (731)
Q Consensus 220 ~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~ 299 (731)
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD----------~R~~~~~V~Sr~G~~~~--------------A 61 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID----------TRYGVGKVSSRIGLSSE--------------A 61 (201)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC----------CCCCCCEEEECCCCCCC--------------C
T ss_conf 99997157686359999999999975980899852533----------53564336531587665--------------3
Q ss_pred EEEECCHHHHHHHCC------CEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECC
Q ss_conf 999400121100100------013677405532100002443224899999751103210000
Q gi|254780619|r 300 VIVGVRSALFLPFKK------LGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLV 356 (731)
Q Consensus 300 IVIGtRSAif~P~~n------LglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilg 356 (731)
T Consensus 62 ~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQ---F~~~-----~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 62 VVIPSDTDIFDEIAALHEKPPVDCVLIDEAQ---FFDE-----ELVYVLNELADRLGIPVICY 116 (201)
T ss_pred EECCCHHHHHHHHHHCCCCCCCCEEEEEHHH---HCCH-----HHHHHHHHHHHHCCCEEEEE
T ss_conf 5638757899999851347875789996167---1897-----89999999986149889995