HHsearch alignment for GI: 254780619 and conserved domain: COG1439

>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only].

Probab=90.84  E-value=0.12  Score=31.66  Aligned_cols=74  Identities=27%  Similarity=0.352  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHHHHHCCCCE--EEEEECCCCEEHHCCCCCCCCCCCCCCCCC-EEEEEC-----CCCCCEECHHHCCCCCC
Q ss_conf             4798999999886226551--799742220000002356543431014652-012113-----57832000021024465
Q gi|254780619|r  405 SLSPEMIDGIRHTLARNEQ--TLLFLNRRGYAPLTLCQVCGNRLKCLHCSC-WLVEHR-----SKKKLYCHQCGHSAIYS  476 (731)
Q Consensus       405 ~lS~~l~~~i~~~l~~g~q--vll~lnRrGya~~~~C~~Cg~~~~C~~C~~-~l~~h~-----~~~~l~Ch~Cg~~~~~~  476 (731)
T Consensus        82 ~LS~tDi~VlalAlel~~~~~v~l~Td--Dysv-------QNVa~~Lgi~~~~~~~~~~I~~v~~w~~rC~GC~~~f~~~  152 (177)
T COG1439          82 NLSPTDIEVLALALELGEEVQVALATD--DYSV-------QNVALQLGLNVRSISYKGKIKKVRKWRLRCHGCKRIFPEP  152 (177)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEC--CHHH-------HHHHHHHCCEEEEEECCCCCCEEEEEEEEEECCCEECCCC
T ss_conf             157555999998886156546069954--4578-------7899972946774001576114753568984575250898


Q ss_pred             -CCCCCCCCCCE
Q ss_conf             -55666787411
Q gi|254780619|r  477 -QSCVVCGSSGK  487 (731)
Q Consensus       477 -~~Cp~Cg~~~~  487 (731)
T Consensus       153 ~~~Cp~CG~~~~  164 (177)
T COG1439         153 KDFCPICGSPLK  164 (177)
T ss_pred             CCCCCCCCCCEE
T ss_conf             880778999117