HHsearch alignment for GI: 254780619 and conserved domain: COG1675

>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription].

Probab=91.58  E-value=0.15  Score=30.97  Aligned_cols=46  Identities=20%  Similarity=0.310  Sum_probs=27.0

Q ss_pred             CCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHH
Q ss_conf             1014652012113578320000210244655566678741100135428998888520
Q gi|254780619|r  447 KCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCE  504 (731)
Q Consensus       447 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~  504 (731)
T Consensus       115 ~C~~~~~r~sfde------------A~~~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~  160 (176)
T COG1675         115 VCPNCHVKYSFDE------------AMELGFTCPKCGEDLEEYDSSEEIEELESELDE  160 (176)
T ss_pred             ECCCCCCCCCHHH------------HHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHH
T ss_conf             6778877314999------------998379888777424440462789999999999