HHsearch alignment for GI: 254780619 and conserved domain: COG3972
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only].
Probab=92.45 E-value=0.17 Score=30.52 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=67.3
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHCCC-------C--CEEEEEE--CCCCCH
Q ss_conf 96199844753157999999999985146--847997152100134455543038-------9--7689962--355723
Q gi|254780619|r 218 FAVSLISGVTGSGKTEVYLEIVAAVLHLG--KQVLILLPEISLTSAILERFQKRF-------G--VKPAEWH--SSLSTS 284 (731)
Q Consensus 218 f~~~LL~GvTGSGKTEVYl~li~~~L~~G--kqvLiLvPEI~Lt~Q~~~rl~~rF-------~--~~v~v~H--S~ls~~ 284 (731)
T Consensus 176 ~G~qrIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~ 255 (660)
T COG3972 176 FGKQRIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKE 255 (660)
T ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 73465200247873029887778974479986389986667888999999999999886248872426888435787888
Q ss_pred HHHHHHHHHHCCCCEEEEECCHHHH--------HHHCC---CEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHH
Q ss_conf 5667899997199739994001211--------00100---013677405532100002443224899999751
Q gi|254780619|r 285 MREKIWRQVARGAISVIVGVRSALF--------LPFKK---LGLIVIDEEHDISYKQEEGILYNARDMSIVRGK 347 (731)
Q Consensus 285 eR~~~w~~i~~G~~~IVIGtRSAif--------~P~~n---LglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~ 347 (731)
T Consensus 256 g~y~~~~~~~-~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDF-------P~-~F~~Lcf~~tk 320 (660)
T COG3972 256 GFYGMYRYIC-HYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDF-------PQ-SFIDLCFMVTK 320 (660)
T ss_pred CCHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC-------CH-HHHHHHHHHHC
T ss_conf 6038899984-266545478774067999999986425642317994245547-------78-99999999824