HHsearch alignment for GI: 254780619 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=99.96 E-value=1.4e-26 Score=222.47 Aligned_cols=316 Identities=19% Similarity=0.314 Sum_probs=249.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC-CEEEE
Q ss_conf 68837899999998752048961998447531579999999999851468479971521001344555430389-76899
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFG-VKPAE 276 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~-~~v~v 276 (731)
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k-~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~ 175 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQK-EDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDL 175 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 32724789999999998715-76899974279851016999999996598699846861011777899997621498666
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCEEEEEEECCCCC-CHHCCCCCCCHHHHHHHHHHHCCCCEEC
Q ss_conf 623557235667899997199739994001211001000136774055321-0000244322489999975110321000
Q gi|254780619|r 277 WHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDIS-YKQEEGILYNARDMSIVRGKIESFPVVL 355 (731)
Q Consensus 277 ~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P~~nLglIIvDEEHd~s-ykq~~~pry~aRdvA~~Ra~~~~~~lil 355 (731)
T Consensus 176 Lyg~S~~~f-----------r~plvVaTtHQLlrFk~aFD~liIDEV-DAFP~~~d~-----~L~~Av~~ark~~g~~Iy 238 (441)
T COG4098 176 LYGDSDSYF-----------RAPLVVATTHQLLRFKQAFDLLIIDEV-DAFPFSDDQ-----SLQYAVKKARKKEGATIY 238 (441)
T ss_pred EECCCCHHC-----------CCCEEEEEHHHHHHHHHHCCEEEEECC-CCCCCCCCH-----HHHHHHHHHHCCCCCEEE
T ss_conf 725871313-----------344799766888888864338998302-456566788-----899999975123673699
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCC--CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCE
Q ss_conf 024543246775321234441243223676543321102222--332224547989999998862265517997422200
Q gi|254780619|r 356 VSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRG--QTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNRRGY 433 (731)
Q Consensus 356 gSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~ivDm~~--~~~~~~~~lS~~l~~~i~~~l~~g~qvll~lnRrGy 433 (731)
T Consensus 239 lTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~-kl~~kl~~~lekq~~~~~P~liF~p---- 313 (441)
T COG4098 239 LTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRN-KLPLKLKRWLEKQRKTGRPVLIFFP---- 313 (441)
T ss_pred EECCCHHHHHHHHHHCCEEEEECCHHHCCCCCCCCCEEEECCHHHHHHHC-CCCHHHHHHHHHHHHCCCCEEEEEC----
T ss_conf 96488078888754077567634465438998987428864477776644-4778999999998743882899925----
Q ss_pred EHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 00002356543431014652012113578320000210244655566678741100135428998888520485200010
Q gi|254780619|r 434 APLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISI 513 (731)
Q Consensus 434 a~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~ 513 (731)
T Consensus 314 --------------------------------------------------~---I~~----~eq~a~~lk~~~~~~~i~~ 336 (441)
T COG4098 314 --------------------------------------------------E---IET----MEQVAAALKKKLPKETIAS 336 (441)
T ss_pred --------------------------------------------------C---HHH----HHHHHHHHHHHCCCCCEEE
T ss_conf --------------------------------------------------0---588----9999999986188642156
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 23211358678999998621257657987044302311345201233000344310245578999998754311025667
Q gi|254780619|r 514 LSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFG 593 (731)
Q Consensus 514 ~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~ 593 (731)
T Consensus 337 Vhs~d~~R~----EkV~~fR~G~~~lLiTTTILERGVTfp~vd-V~Vlgaeh~vf---------TesaLVQIaGRvGRs~ 402 (441)
T COG4098 337 VHSEDQHRK----EKVEAFRDGKITLLITTTILERGVTFPNVD-VFVLGAEHRVF---------TESALVQIAGRVGRSL 402 (441)
T ss_pred EECCCCCHH----HHHHHHHCCCEEEEEEEEHHHCCCCCCCCE-EEEECCCCCCC---------CHHHHHHHHHHCCCCC
T ss_conf 533670178----999998758638999844033266435623-99954776420---------1889999752316787
Q ss_pred C--CCEEEEEECCCCC
Q ss_conf 8--8689999329864
Q gi|254780619|r 594 L--KSLGLIQAYQPTH 607 (731)
Q Consensus 594 ~--~g~v~iQt~~p~~ 607 (731)
T Consensus 403 ~~PtGdv~FFH~G~sk 418 (441)
T COG4098 403 ERPTGDVLFFHYGKSK 418 (441)
T ss_pred CCCCCCEEEEECCCHH
T ss_conf 6898758999646338