HHsearch alignment for GI: 254780619 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=95.46 E-value=0.028 Score=36.52 Aligned_cols=116 Identities=17% Similarity=0.268 Sum_probs=62.8
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHH-C--CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 9999998752048961998447531579999999999851-4--684799715210013445554303897689962355
Q gi|254780619|r 205 DVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLH-L--GKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSL 281 (731)
Q Consensus 205 ~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~-~--GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~l 281 (731)
T Consensus 132 aAA~~Va~~pg~~yNPLfIyG~~GlGKTHL-l~AIgn~~~~~~p~~~v~Y~tae~-F~~~~v~al--------------- 194 (447)
T PRK00149 132 AAALAVAENPGKAYNPLFIYGGVGLGKTHL-LHAIGNYILEKNPNAKVVYVSSEK-FTNDFVKAL--------------- 194 (447)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCHHHH-HHHHHHHHHHHCCCCEEEEEEHHH-HHHHHHHHH---------------
T ss_conf 999999837676778558977998878899-999999999858997289954999-999999998---------------
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCHHHH-HHHCCCEEEEEEECCCCCCHHCC-CCCCCHHHHHHHHHHHCCCCEECCCCC
Q ss_conf 7235667899997199739994001211-00100013677405532100002-443224899999751103210000245
Q gi|254780619|r 282 STSMREKIWRQVARGAISVIVGVRSALF-LPFKKLGLIVIDEEHDISYKQEE-GILYNARDMSIVRGKIESFPVVLVSAT 359 (731)
Q Consensus 282 s~~eR~~~w~~i~~G~~~IVIGtRSAif-~P~~nLglIIvDEEHd~sykq~~-~pry~aRdvA~~Ra~~~~~~lilgSAT 359 (731)
T Consensus 195 ------------~~~~--------~~~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~l----~~~~kqiv~tsd~ 250 (447)
T PRK00149 195 ------------RNNA--------MEEFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNAL----HENNKQIVITSDR 250 (447)
T ss_pred ------------HCCC--------HHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHHH----HHCCCEEEEECCC
T ss_conf ------------5186--------999999997288543214888605577999999999999----9849968995788
Q ss_pred CC
Q ss_conf 43
Q gi|254780619|r 360 PS 361 (731)
Q Consensus 360 PS 361 (731)
T Consensus 251 ~P 252 (447)
T PRK00149 251 PP 252 (447)
T ss_pred CH
T ss_conf 96