HHsearch alignment for GI: 254780619 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.83 E-value=2.1e-17 Score=152.27 Aligned_cols=318 Identities=17% Similarity=0.256 Sum_probs=189.1
Q ss_pred HHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 87709998999752455722344554102356654344666688378999999987520489619984475315799999
Q gi|254780619|r 157 IRASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYL 236 (731)
Q Consensus 157 ~~~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl 236 (731)
T Consensus 86 F~dl~L~~~ll~aL~~~Gf~~---------------------PTpIQ~~aIP~iL~G-----kDvi~~A~TGSGKTlAyL 139 (472)
T PRK01297 86 FHDFNLAPELMHAIHDLGFPY---------------------CTPIQAQVLGYTLAG-----HDAIGRAQTGTGKTAAFL 139 (472)
T ss_pred HHHCCCCHHHHHHHHHCCCCC---------------------CCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHH
T ss_conf 864788999999999779999---------------------999999999999769-----988998999867999999
Q ss_pred H-HHHHHHHC---------CCCEEEEECCCHHHHHHHHH---HHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9-99998514---------68479971521001344555---43038976899623557235667899997199739994
Q gi|254780619|r 237 E-IVAAVLHL---------GKQVLILLPEISLTSAILER---FQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVG 303 (731)
Q Consensus 237 ~-li~~~L~~---------GkqvLiLvPEI~Lt~Q~~~r---l~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIG 303 (731)
T Consensus 140 LPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~~~~~q~---~~l~~~~~dIvVa 216 (472)
T PRK01297 140 ISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVA 216 (472)
T ss_pred HHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH---HHHHCCCCCEEEE
T ss_conf 9999999717751011368952999879999999999999997462797699997898879999---9985589988997
Q ss_pred CCHHHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 001211-------0010001367740553210000244322489999975110321000024543246775321234441
Q gi|254780619|r 304 VRSALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSV 376 (731)
Q Consensus 304 tRSAif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~~~ 376 (731)
T Consensus 217 TPGRL~~l~~~~~~~l~~v~~lVlDEAD-~LL--d~gf~~~v~~Il~~~p~~~~rQ~~lfSATl~~~v~~l~~~~----~ 289 (472)
T PRK01297 217 TPGRLLDFNQRGEVHLDMVEVMVLDEAD-RML--DMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQW----T 289 (472)
T ss_pred CHHHHHHHHCCCCEECCCCEEEEEECHH-HHH--CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH----C
T ss_conf 9799998743482542552299998731-210--25759999999996898557169998525778999999997----7
Q ss_pred CCCCCCCCCCCCCCEECCCCCCC-----CCCC-CCCC-----HHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCC
Q ss_conf 24322367654332110222233-----2224-5479-----89999998862265517997422200000023565434
Q gi|254780619|r 377 HLSTRYRNSALPHLQVIDMRGQT-----IAQG-KSLS-----PEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNR 445 (731)
Q Consensus 377 ~l~~R~~~~~~P~i~ivDm~~~~-----~~~~-~~lS-----~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~ 445 (731)
T Consensus 290 --~~-------p~--~v~i~~~~~~~~~v~q~~~~~~~~dk~~~L~~ll~~~--~~~k~IIF~nt~~~~----------- 345 (472)
T PRK01297 290 --TD-------PA--IVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQN--PWERVMVFANRKDEV----------- 345 (472)
T ss_pred --CC-------CE--EEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHC--CCCCEEEECCCHHHH-----------
T ss_conf --99-------88--9996577667776028999818889999999999847--987368961749999-----------
Q ss_pred CCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHH
Q ss_conf 31014652012113578320000210244655566678741100135428998888520485200010232113586789
Q gi|254780619|r 446 LKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRL 525 (731)
Q Consensus 446 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~ 525 (731)
T Consensus 346 --------------------------------------------------~~l~~~L~~~--g~~~~~lhg~l~--q~~R 371 (472)
T PRK01297 346 --------------------------------------------------RRIEERLVKD--GINAAQLSGDVP--QHKR 371 (472)
T ss_pred --------------------------------------------------HHHHHHHHHC--CCCEEEEECCCC--HHHH
T ss_conf --------------------------------------------------9999876544--961686437789--9999
Q ss_pred HHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 999986212576579870443023113452012330003443102455789999987543110256678868999
Q gi|254780619|r 526 QLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI 600 (731)
Q Consensus 526 ~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~i 600 (731)
T Consensus 372 ~~~l~~F~~g~~~iLVaTDvaaRGLDi~~V~~VInyD~------P~------~~~~YIHRiGRTGRaG~~G~ais 434 (472)
T PRK01297 372 IKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL------PE------DPDDYVHRIGRTGRAGASGVSIS 434 (472)
T ss_pred HHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECC------CC------CHHHHHHCCCHHHCCCCCEEEEE
T ss_conf 99999997699969988661336677578888999689------89------76760102653126899637999