HHsearch alignment for GI: 254780619 and conserved domain: PRK04537

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.80  E-value=7.3e-17  Score=148.07  Aligned_cols=317  Identities=20%  Similarity=0.247  Sum_probs=186.1

Q ss_pred             HHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf             77099989997524557223445541023566543446666883789999999875204896199844753157999999
Q gi|254780619|r  158 RASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLE  237 (731)
Q Consensus       158 ~~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~  237 (731)
T Consensus        12 ~~LgL~~~Ll~aL~~~Gf~~---------------------PTpIQ~~aIP~iL~G-----kDvi~~A~TGSGKTLAYlL   65 (574)
T PRK04537         12 SSFDLHPALVAGLESAGFTR---------------------CTPIQALTLPVALPG-----GDVAGQAQTGTGKTLAFLV   65 (574)
T ss_pred             HHCCCCHHHHHHHHHCCCCC---------------------CCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHH
T ss_conf             66698999999999779998---------------------999999999999579-----9889984898889999999


Q ss_pred             HHHH-HHH---------CCCCEEEEECCCHHHHHHHHHHH---CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             9999-851---------46847997152100134455543---0389768996235572356678999971997399940
Q gi|254780619|r  238 IVAA-VLH---------LGKQVLILLPEISLTSAILERFQ---KRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGV  304 (731)
Q Consensus       238 li~~-~L~---------~GkqvLiLvPEI~Lt~Q~~~rl~---~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGt  304 (731)
T Consensus        66 PiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q----~~~L~~g~dIVVaT  141 (574)
T PRK04537         66 AVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ----RELLQQGVDVIIAT  141 (574)
T ss_pred             HHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH----HHHHCCCCCEEEEC
T ss_conf             99999983744345778996199977989999999999999864589779999799668899----99873599989989


Q ss_pred             CHHHH--------HHHCCCEEEEEEECC---CCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHH
Q ss_conf             01211--------001000136774055---3210000244322489999975110321000024543246775321234
Q gi|254780619|r  305 RSALF--------LPFKKLGLIVIDEEH---DISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRY  373 (731)
Q Consensus       305 RSAif--------~P~~nLglIIvDEEH---d~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~  373 (731)
T Consensus       142 PGRLld~L~~~~~~~L~~vk~LVLDEAD~LLd~gF~~------di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~---  212 (574)
T PRK04537        142 PGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIK------DIRFLLRRMPERGTRQTLLFSATLSHRVLELAYE---  212 (574)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCHH------HHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHH---
T ss_conf             8999999981798653331589962732654287799------9999999666556855899983277799999999---


Q ss_pred             HHHCCCCCCCCCCCCCCEECCCCC---CCCCCCC-CCCH-HHHHHHHHHH--CCCCEEEEEECCCCEEHHCCCCCCCCCC
Q ss_conf             441243223676543321102222---3322245-4798-9999998862--2655179974222000000235654343
Q gi|254780619|r  374 HSVHLSTRYRNSALPHLQVIDMRG---QTIAQGK-SLSP-EMIDGIRHTL--ARNEQTLLFLNRRGYAPLTLCQVCGNRL  446 (731)
Q Consensus       374 ~~~~l~~R~~~~~~P~i~ivDm~~---~~~~~~~-~lS~-~l~~~i~~~l--~~g~qvll~lnRrGya~~~~C~~Cg~~~  446 (731)
T Consensus       213 -~l~~---------P~~i~v~~~~~~~~~I~Q~~~~~~~~~K~~~L~~LL~~~~~~k~IIF~nT~---------------  267 (574)
T PRK04537        213 -HMNE---------PEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTK---------------  267 (574)
T ss_pred             -HCCC---------CEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCHH---------------
T ss_conf             -7799---------869996566545776038999777789999999999726776511533418---------------


Q ss_pred             CCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf             10146520121135783200002102446555666787411001354289988885204852000102321135867899
Q gi|254780619|r  447 KCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQ  526 (731)
Q Consensus       447 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~  526 (731)
T Consensus       268 ----------------------------------------------~~ve~l~~~L~~~--g~~v~~LHG~ls--Q~eR~  297 (574)
T PRK04537        268 ----------------------------------------------AFVERVARTLERH--GYRVGVLSGDVP--QKKRE  297 (574)
T ss_pred             ----------------------------------------------HHHHHHHHHHHHC--CCCEEEEECCCC--HHHHH
T ss_conf             ----------------------------------------------9999999999977--996899709999--99999


Q ss_pred             HHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             99986212576579870443023113452012330003443102455789999987543110256678868999
Q gi|254780619|r  527 LQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI  600 (731)
Q Consensus       527 ~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~i  600 (731)
T Consensus       298 ~~L~~Fk~G~~~VLVaTDVAARGIDIp~V~~VINYDl------P~------~~e~YVHRIGRTGRaGr~G~AIT  359 (574)
T PRK04537        298 SLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL------PF------DAEDYVHRIGRTARLGEEGDAIS  359 (574)
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECC------CC------CHHHHHCCCCHHHCCCCCEEEEE
T ss_conf             9999997699979977350023357146997999579------69------82141124535037899335999