HHsearch alignment for GI: 254780619 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.80 E-value=7.3e-17 Score=148.07 Aligned_cols=317 Identities=20% Similarity=0.247 Sum_probs=186.1
Q ss_pred HHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 77099989997524557223445541023566543446666883789999999875204896199844753157999999
Q gi|254780619|r 158 RASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLE 237 (731)
Q Consensus 158 ~~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~ 237 (731)
T Consensus 12 ~~LgL~~~Ll~aL~~~Gf~~---------------------PTpIQ~~aIP~iL~G-----kDvi~~A~TGSGKTLAYlL 65 (574)
T PRK04537 12 SSFDLHPALVAGLESAGFTR---------------------CTPIQALTLPVALPG-----GDVAGQAQTGTGKTLAFLV 65 (574)
T ss_pred HHCCCCHHHHHHHHHCCCCC---------------------CCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHH
T ss_conf 66698999999999779998---------------------999999999999579-----9889984898889999999
Q ss_pred HHHH-HHH---------CCCCEEEEECCCHHHHHHHHHHH---CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999-851---------46847997152100134455543---0389768996235572356678999971997399940
Q gi|254780619|r 238 IVAA-VLH---------LGKQVLILLPEISLTSAILERFQ---KRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGV 304 (731)
Q Consensus 238 li~~-~L~---------~GkqvLiLvPEI~Lt~Q~~~rl~---~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGt 304 (731)
T Consensus 66 PiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q----~~~L~~g~dIVVaT 141 (574)
T PRK04537 66 AVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ----RELLQQGVDVIIAT 141 (574)
T ss_pred HHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH----HHHHCCCCCEEEEC
T ss_conf 99999983744345778996199977989999999999999864589779999799668899----99873599989989
Q ss_pred CHHHH--------HHHCCCEEEEEEECC---CCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHH
Q ss_conf 01211--------001000136774055---3210000244322489999975110321000024543246775321234
Q gi|254780619|r 305 RSALF--------LPFKKLGLIVIDEEH---DISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRY 373 (731)
Q Consensus 305 RSAif--------~P~~nLglIIvDEEH---d~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~ 373 (731)
T Consensus 142 PGRLld~L~~~~~~~L~~vk~LVLDEAD~LLd~gF~~------di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~--- 212 (574)
T PRK04537 142 PGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIK------DIRFLLRRMPERGTRQTLLFSATLSHRVLELAYE--- 212 (574)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCHH------HHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHH---
T ss_conf 8999999981798653331589962732654287799------9999999666556855899983277799999999---
Q ss_pred HHHCCCCCCCCCCCCCCEECCCCC---CCCCCCC-CCCH-HHHHHHHHHH--CCCCEEEEEECCCCEEHHCCCCCCCCCC
Q ss_conf 441243223676543321102222---3322245-4798-9999998862--2655179974222000000235654343
Q gi|254780619|r 374 HSVHLSTRYRNSALPHLQVIDMRG---QTIAQGK-SLSP-EMIDGIRHTL--ARNEQTLLFLNRRGYAPLTLCQVCGNRL 446 (731)
Q Consensus 374 ~~~~l~~R~~~~~~P~i~ivDm~~---~~~~~~~-~lS~-~l~~~i~~~l--~~g~qvll~lnRrGya~~~~C~~Cg~~~ 446 (731)
T Consensus 213 -~l~~---------P~~i~v~~~~~~~~~I~Q~~~~~~~~~K~~~L~~LL~~~~~~k~IIF~nT~--------------- 267 (574)
T PRK04537 213 -HMNE---------PEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTK--------------- 267 (574)
T ss_pred -HCCC---------CEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCHH---------------
T ss_conf -7799---------869996566545776038999777789999999999726776511533418---------------
Q ss_pred CCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 10146520121135783200002102446555666787411001354289988885204852000102321135867899
Q gi|254780619|r 447 KCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQ 526 (731)
Q Consensus 447 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 526 (731)
T Consensus 268 ----------------------------------------------~~ve~l~~~L~~~--g~~v~~LHG~ls--Q~eR~ 297 (574)
T PRK04537 268 ----------------------------------------------AFVERVARTLERH--GYRVGVLSGDVP--QKKRE 297 (574)
T ss_pred ----------------------------------------------HHHHHHHHHHHHC--CCCEEEEECCCC--HHHHH
T ss_conf ----------------------------------------------9999999999977--996899709999--99999
Q ss_pred HHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 99986212576579870443023113452012330003443102455789999987543110256678868999
Q gi|254780619|r 527 LQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI 600 (731)
Q Consensus 527 ~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~i 600 (731)
T Consensus 298 ~~L~~Fk~G~~~VLVaTDVAARGIDIp~V~~VINYDl------P~------~~e~YVHRIGRTGRaGr~G~AIT 359 (574)
T PRK04537 298 SLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDL------PF------DAEDYVHRIGRTARLGEEGDAIS 359 (574)
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECC------CC------CHHHHHCCCCHHHCCCCCEEEEE
T ss_conf 9999997699979977350023357146997999579------69------82141124535037899335999