HHsearch alignment for GI: 254780619 and conserved domain: PRK04537

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.77  E-value=0.1  Score=32.20  Aligned_cols=121  Identities=13%  Similarity=0.246  Sum_probs=82.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             75315799999999998514684799715210013445554303897689962355723566789999719973999400
Q gi|254780619|r  226 VTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVR  305 (731)
Q Consensus       226 vTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtR  305 (731)
T Consensus       239 ~~~~~K~~~L~~LL~~--~~~~k~IIF~nT~~~ve~l~~~L~~-~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTD  315 (574)
T PRK04537        239 PSDEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLER-HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD  315 (574)
T ss_pred             CCHHHHHHHHHHHHHH--CCCCCCEEECCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf             7778999999999972--6776511533418999999999997-799689970999999999999999769997997735


Q ss_pred             HHHH-HHHCCCEEEEE-EECCC-CCCHHCCCCCCCHHHHHHHHHHHCCCCEECCC
Q ss_conf             1211-00100013677-40553-21000024432248999997511032100002
Q gi|254780619|r  306 SALF-LPFKKLGLIVI-DEEHD-ISYKQEEGILYNARDMSIVRGKIESFPVVLVS  357 (731)
Q Consensus       306 SAif-~P~~nLglIIv-DEEHd-~sykq~~~pry~aRdvA~~Ra~~~~~~lilgS  357 (731)
T Consensus       316 VAARGIDIp~V~~VINYDlP~~~e~YVHR-----IGR---TGRaGr~G~AITfv~  362 (574)
T PRK04537        316 VAARGLHIDGVKYVYNYDLPFDAEDYVHR-----IGR---TARLGEEGDAISFAC  362 (574)
T ss_pred             CCCCCCCCCCCCEEEEECCCCCHHHHHCC-----CCH---HHCCCCCEEEEEEEC
T ss_conf             00233571469979995796982141124-----535---037899335999877