HHsearch alignment for GI: 254780619 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=95.77 E-value=0.1 Score=32.20 Aligned_cols=121 Identities=13% Similarity=0.246 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 75315799999999998514684799715210013445554303897689962355723566789999719973999400
Q gi|254780619|r 226 VTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVR 305 (731)
Q Consensus 226 vTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtR 305 (731)
T Consensus 239 ~~~~~K~~~L~~LL~~--~~~~k~IIF~nT~~~ve~l~~~L~~-~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTD 315 (574)
T PRK04537 239 PSDEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLER-HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD 315 (574)
T ss_pred CCHHHHHHHHHHHHHH--CCCCCCEEECCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 7778999999999972--6776511533418999999999997-799689970999999999999999769997997735
Q ss_pred HHHH-HHHCCCEEEEE-EECCC-CCCHHCCCCCCCHHHHHHHHHHHCCCCEECCC
Q ss_conf 1211-00100013677-40553-21000024432248999997511032100002
Q gi|254780619|r 306 SALF-LPFKKLGLIVI-DEEHD-ISYKQEEGILYNARDMSIVRGKIESFPVVLVS 357 (731)
Q Consensus 306 SAif-~P~~nLglIIv-DEEHd-~sykq~~~pry~aRdvA~~Ra~~~~~~lilgS 357 (731)
T Consensus 316 VAARGIDIp~V~~VINYDlP~~~e~YVHR-----IGR---TGRaGr~G~AITfv~ 362 (574)
T PRK04537 316 VAARGLHIDGVKYVYNYDLPFDAEDYVHR-----IGR---TARLGEEGDAISFAC 362 (574)
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHCC-----CCH---HHCCCCCEEEEEEEC
T ss_conf 00233571469979995796982141124-----535---037899335999877