HHsearch alignment for GI: 254780619 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.76 E-value=8.9e-16 Score=139.76 Aligned_cols=325 Identities=18% Similarity=0.227 Sum_probs=179.6
Q ss_pred HHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 77099989997524557223445541023566543446666883789999999875204896199844753157999999
Q gi|254780619|r 158 RASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLE 237 (731)
Q Consensus 158 ~~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~ 237 (731)
T Consensus 12 ~~lgL~~~ll~~L~~~g~~---------------------~pTpIQ~~aIP~il~G-----~Dvi~~A~TGSGKTlAfll 65 (423)
T PRK04837 12 SDFALHPKVVEALEKKGFE---------------------YCTPIQALALPLTLAG-----RDVAGQAQTGTGKTMAFLT 65 (423)
T ss_pred HHCCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHH
T ss_conf 2479699999999977999---------------------9999999999999679-----9889989998749999999
Q ss_pred HHHH-HHH----CC-----CCEEEEECCCHHHHHHHHHHH---CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999-851----46-----847997152100134455543---0389768996235572356678999971997399940
Q gi|254780619|r 238 IVAA-VLH----LG-----KQVLILLPEISLTSAILERFQ---KRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGV 304 (731)
Q Consensus 238 li~~-~L~----~G-----kqvLiLvPEI~Lt~Q~~~rl~---~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGt 304 (731)
T Consensus 66 Pil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~----~~l~~~~dIlV~T 141 (423)
T PRK04837 66 ATFHHLLSHPAPEGRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQL----KVLESGVDILIGT 141 (423)
T ss_pred HHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH----HHHHCCCCEEEEC
T ss_conf 999999837453345567861899938899999999999997432584599998998879999----9871799989989
Q ss_pred CHHHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 01211-------00100013677405532100002443224899999751103210000245432467753212344412
Q gi|254780619|r 305 RSALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVH 377 (731)
Q Consensus 305 RSAif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~ 377 (731)
T Consensus 142 PgRL~d~~~~~~~~l~~i~~lVlDEAD-~ll--d~gF~~~i~~i~~~~p~~~~r~~~lfSATl~~~v~~la~~----~l~ 214 (423)
T PRK04837 142 TGRLIDYAKQNHINLGAIQVVVLDEAD-RMF--DLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFE----HMN 214 (423)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECHH-HHH--HCCCHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHH----HCC
T ss_conf 189999986422123664289963446-543--0263999999999689622108999703688899999999----778
Q ss_pred CCCCCCCCCCCCCEEC-CCCCCCCC-CCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 4322367654332110-22223322-245479899999988622655179974222000000235654343101465201
Q gi|254780619|r 378 LSTRYRNSALPHLQVI-DMRGQTIA-QGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWL 455 (731)
Q Consensus 378 l~~R~~~~~~P~i~iv-Dm~~~~~~-~~~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l 455 (731)
T Consensus 215 ~p~~i~v~--~~~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~k~iIF~nt~~----------------------- 267 (423)
T PRK04837 215 NPEYVEVE--PEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE--WPDRAIIFANTKH----------------------- 267 (423)
T ss_pred CCEEEEEC--CCCCCCCCEEEEEEEECHHHHHHHHHHHHHHH--CCCCEEEECCHHH-----------------------
T ss_conf 98799965--77656654269999917277999999999840--8874688616288-----------------------
Q ss_pred EEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 21135783200002102446555666787411001354289988885204852000102321135867899999862125
Q gi|254780619|r 456 VEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKG 535 (731)
Q Consensus 456 ~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~ 535 (731)
T Consensus 268 --------------------------------------~~~~l~~~L~~~--g~~~~~lhg~~~--q~~R~~~l~~F~~g 305 (423)
T PRK04837 268 --------------------------------------RCEEIWGHLAAD--GHRVGLLTGDVP--QKKRLRILEQFTRG 305 (423)
T ss_pred --------------------------------------HHHHHHHHHHHC--CCCEEEECCCCC--HHHHHHHHHHHHCC
T ss_conf --------------------------------------899999999765--981787225457--99999999999769
Q ss_pred CCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 76579870443023113452012330003443102455789999987543110256678868999
Q gi|254780619|r 536 EIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI 600 (731)
Q Consensus 536 ~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~i 600 (731)
T Consensus 306 ~~~vLVaTDvaaRGLDi~~V~~VInyD~------P~------~~~~YiHRiGRTgRaG~~G~ait 358 (423)
T PRK04837 306 DLDILVATDVAARGLHIPDVTHVFNYDL------PD------DCEDYVHRIGRTGRAGASGHSIS 358 (423)
T ss_pred CCCEEEEHHHHHCCCCCCCCCEEEEECC------CC------CHHHEECCCCHHHCCCCCEEEEE
T ss_conf 9989987004327777267988999699------89------74551004654127899468999