HHsearch alignment for GI: 254780619 and conserved domain: PRK04837

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.76  E-value=8.9e-16  Score=139.76  Aligned_cols=325  Identities=18%  Similarity=0.227  Sum_probs=179.6

Q ss_pred             HHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf             77099989997524557223445541023566543446666883789999999875204896199844753157999999
Q gi|254780619|r  158 RASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLE  237 (731)
Q Consensus       158 ~~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~  237 (731)
T Consensus        12 ~~lgL~~~ll~~L~~~g~~---------------------~pTpIQ~~aIP~il~G-----~Dvi~~A~TGSGKTlAfll   65 (423)
T PRK04837         12 SDFALHPKVVEALEKKGFE---------------------YCTPIQALALPLTLAG-----RDVAGQAQTGTGKTMAFLT   65 (423)
T ss_pred             HHCCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHH
T ss_conf             2479699999999977999---------------------9999999999999679-----9889989998749999999


Q ss_pred             HHHH-HHH----CC-----CCEEEEECCCHHHHHHHHHHH---CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             9999-851----46-----847997152100134455543---0389768996235572356678999971997399940
Q gi|254780619|r  238 IVAA-VLH----LG-----KQVLILLPEISLTSAILERFQ---KRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGV  304 (731)
Q Consensus       238 li~~-~L~----~G-----kqvLiLvPEI~Lt~Q~~~rl~---~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGt  304 (731)
T Consensus        66 Pil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~----~~l~~~~dIlV~T  141 (423)
T PRK04837         66 ATFHHLLSHPAPEGRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQL----KVLESGVDILIGT  141 (423)
T ss_pred             HHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH----HHHHCCCCEEEEC
T ss_conf             999999837453345567861899938899999999999997432584599998998879999----9871799989989


Q ss_pred             CHHHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             01211-------00100013677405532100002443224899999751103210000245432467753212344412
Q gi|254780619|r  305 RSALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVH  377 (731)
Q Consensus       305 RSAif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~  377 (731)
T Consensus       142 PgRL~d~~~~~~~~l~~i~~lVlDEAD-~ll--d~gF~~~i~~i~~~~p~~~~r~~~lfSATl~~~v~~la~~----~l~  214 (423)
T PRK04837        142 TGRLIDYAKQNHINLGAIQVVVLDEAD-RMF--DLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFE----HMN  214 (423)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECHH-HHH--HCCCHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHH----HCC
T ss_conf             189999986422123664289963446-543--0263999999999689622108999703688899999999----778


Q ss_pred             CCCCCCCCCCCCCEEC-CCCCCCCC-CCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEE
Q ss_conf             4322367654332110-22223322-245479899999988622655179974222000000235654343101465201
Q gi|254780619|r  378 LSTRYRNSALPHLQVI-DMRGQTIA-QGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWL  455 (731)
Q Consensus       378 l~~R~~~~~~P~i~iv-Dm~~~~~~-~~~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l  455 (731)
T Consensus       215 ~p~~i~v~--~~~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~k~iIF~nt~~-----------------------  267 (423)
T PRK04837        215 NPEYVEVE--PEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE--WPDRAIIFANTKH-----------------------  267 (423)
T ss_pred             CCEEEEEC--CCCCCCCCEEEEEEEECHHHHHHHHHHHHHHH--CCCCEEEECCHHH-----------------------
T ss_conf             98799965--77656654269999917277999999999840--8874688616288-----------------------


Q ss_pred             EEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             21135783200002102446555666787411001354289988885204852000102321135867899999862125
Q gi|254780619|r  456 VEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKG  535 (731)
Q Consensus       456 ~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~  535 (731)
T Consensus       268 --------------------------------------~~~~l~~~L~~~--g~~~~~lhg~~~--q~~R~~~l~~F~~g  305 (423)
T PRK04837        268 --------------------------------------RCEEIWGHLAAD--GHRVGLLTGDVP--QKKRLRILEQFTRG  305 (423)
T ss_pred             --------------------------------------HHHHHHHHHHHC--CCCEEEECCCCC--HHHHHHHHHHHHCC
T ss_conf             --------------------------------------899999999765--981787225457--99999999999769


Q ss_pred             CCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             76579870443023113452012330003443102455789999987543110256678868999
Q gi|254780619|r  536 EIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI  600 (731)
Q Consensus       536 ~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~i  600 (731)
T Consensus       306 ~~~vLVaTDvaaRGLDi~~V~~VInyD~------P~------~~~~YiHRiGRTgRaG~~G~ait  358 (423)
T PRK04837        306 DLDILVATDVAARGLHIPDVTHVFNYDL------PD------DCEDYVHRIGRTGRAGASGHSIS  358 (423)
T ss_pred             CCCEEEEHHHHHCCCCCCCCCEEEEECC------CC------CHHHEECCCCHHHCCCCCEEEEE
T ss_conf             9989987004327777267988999699------89------74551004654127899468999