HHsearch alignment for GI: 254780619 and conserved domain: PRK05298
>PRK05298 excinuclease ABC subunit B; Provisional.
Probab=99.77 E-value=2.5e-16 Score=143.91 Aligned_cols=410 Identities=22% Similarity=0.293 Sum_probs=212.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 68837899999998752048961998447531579999999999851468479971521001344555430389768996
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEW 277 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~ 277 (731)
T Consensus 13 ~P~GDQP~AI~~L~~gi~~g~~~Q~LlGvTGSGKTfTmAnvI~~~---~rPtLVlahNKTLAAQLy~Efk~fFP~NaVEY 89 (657)
T PRK05298 13 KPAGDQPQAIAELVEGIESGEKHQTLLGVTGSGKTFTMANVIARV---QRPTLVLAHNKTLAAQLYGEFKEFFPENAVEY 89 (657)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999987999999998997499636997036785668999999986---89759976658899999999997688871799
Q ss_pred E-CC----CC---------------------CHHHHHHHHHHHCCCCEEEEECCHHHH---HHHCCCEEEEE---EECCC
Q ss_conf 2-35----57---------------------235667899997199739994001211---00100013677---40553
Q gi|254780619|r 278 H-SS----LS---------------------TSMREKIWRQVARGAISVIVGVRSALF---LPFKKLGLIVI---DEEHD 325 (731)
Q Consensus 278 H-S~----ls---------------------~~eR~~~w~~i~~G~~~IVIGtRSAif---~P~~nLglIIv---DEEHd 325 (731)
T Consensus 90 FVSYyDYYQPEAYip~tDtYIEKdssIN~eId~lR~sAT~SLl~RrDVIVVASVSCIYGLGsPe~Y~~~~l~l~~G~~i~ 169 (657)
T PRK05298 90 FVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLRVGQEID 169 (657)
T ss_pred EECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCHHHHHHCEEEEECCCEEC
T ss_conf 85144566971114788852423634669999999999998854798699973676168999799973437775897717
Q ss_pred CC--CHHCCCCCCCHHHHHHHHHHH--------------CCCC--E-ECC----------------------------C-
Q ss_conf 21--000024432248999997511--------------0321--0-000----------------------------2-
Q gi|254780619|r 326 IS--YKQEEGILYNARDMSIVRGKI--------------ESFP--V-VLV----------------------------S- 357 (731)
Q Consensus 326 ~s--ykq~~~pry~aRdvA~~Ra~~--------------~~~~--l-ilg----------------------------S- 357 (731)
T Consensus 170 r~~ll~~LV~~qY~RnD~~~~RG~FRVrGDvVdI~Pa~~ed~aiRIeffgDeIE~I~~~Dpltg~~i~~~~~~~IfPAsh 249 (657)
T PRK05298 170 RRELLRRLVELQYERNDIDFQRGTFRVRGDVIDIFPAEYEDRAIRIEFFGDEIERISEFDPLTGEVLGELDRVTIYPASH 249 (657)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf 99999999982877676511685557736647883377776169999957806289998277883524333499817867
Q ss_pred -CCCCHHHHHHH----------------HHHH------------HHH----------------HCCCCCCCCCCCCC---
Q ss_conf -45432467753----------------2123------------444----------------12432236765433---
Q gi|254780619|r 358 -ATPSIESRVNG----------------ISRR------------YHS----------------VHLSTRYRNSALPH--- 389 (731)
Q Consensus 358 -ATPSles~~~~----------------~~g~------------~~~----------------~~l~~R~~~~~~P~--- 389 (731)
T Consensus 250 yVt~~-e~l~~Ai~~I~~EL~eRl~~f~~~gKllEAqRL~qRT~yDlEMl~E~GyCsGIENYSRhl~gR~pGe~P~tLlD 328 (657)
T PRK05298 250 YVTPR-ERLERAIESIKEELEERLKELEKEGKLLEAQRLEQRTRYDLEMLRELGYCSGIENYSRHLSGRAPGEPPPTLLD 328 (657)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 68997-99999999999999999999997677798889999988799999982877560121565069998878944887
Q ss_pred ------CEECC-----------C------CCC-CCCCCCCCCHHHHH---HHHHHHCCCCEEEEEECCCCEEHHCCCCCC
Q ss_conf ------21102-----------2------223-32224547989999---998862265517997422200000023565
Q gi|254780619|r 390 ------LQVID-----------M------RGQ-TIAQGKSLSPEMID---GIRHTLARNEQTLLFLNRRGYAPLTLCQVC 442 (731)
Q Consensus 390 ------i~ivD-----------m------~~~-~~~~~~~lS~~l~~---~i~~~l~~g~qvll~lnRrGya~~~~C~~C 442 (731)
T Consensus 329 Yfp~DfLl~iDESHvtvPQi~gMy~GDrsRK~~LVe~GFRLPSAlDNRPL~feEFe~~~~q~iyVSATPg~yEl~~---s 405 (657)
T PRK05298 329 YFPDDFLLFIDESHVTVPQIGGMYNGDRSRKETLVEYGFRLPSALDNRPLKFEEFEAKVPQTIYVSATPGDYELEK---S 405 (657)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHH---C
T ss_conf 5775659998321124087887862315778889870577872334899788999974487799956985898873---6
Q ss_pred CCCCCCCC-----CCCEEEEECCCCCC--EECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCC--CHHHH
Q ss_conf 43431014-----65201211357832--00002102446555666787411001354289988885204852--00010
Q gi|254780619|r 443 GNRLKCLH-----CSCWLVEHRSKKKL--YCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPL--ARISI 513 (731)
Q Consensus 443 g~~~~C~~-----C~~~l~~h~~~~~l--~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~--~~v~~ 513 (731)
T Consensus 406 ~~vvEQiIRPTGLlDP~ievrp~~~Qiddl~~ei~-------~~~~~~er-~Lv--ttlTkkmaEdLt~yl~~~~ik~~Y 475 (657)
T PRK05298 406 GQVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIR-------KRVAKGER-VLV--TTLTKRMAEDLTDYLKELGIKVRY 475 (657)
T ss_pred CCEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHH-------HHHHCCCE-EEE--EECHHHHHHHHHHHHHHCCCEEEE
T ss_conf 67345777788787984599648787999999999-------99636976-999--954598999999999967980799
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 23211358678999998621257657987044302311345201233000344310245578999998754311025667
Q gi|254780619|r 514 LSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFG 593 (731)
Q Consensus 514 ~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~ 593 (731)
T Consensus 476 lHs~i~t--~eR~eIl~~LR~G~~DVlVGINLLREGLDlPEVSLVaILDADKeGFL---Rs----~~SLiQtiGRAARN~ 546 (657)
T PRK05298 476 LHSDIDT--LERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFL---RS----ERSLIQTIGRAARNV 546 (657)
T ss_pred EECCCCH--HHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCEEEEEEEECCCCCCC---CC----CCHHHHHHHHHHHCC
T ss_conf 6266618--89999999985888758975002204578761357988706852210---35----205999987886257
Q ss_pred CCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 8868999932986488899995897999999999999818888
Q gi|254780619|r 594 LKSLGLIQAYQPTHPVMQALVSGDADSFYESEIRARESVNLPP 636 (731)
Q Consensus 594 ~~g~v~iQt~~p~~~~~~~~~~~d~~~f~~~el~~R~~~~~PP 636 (731)
T Consensus 547 -~G~vIlYAD~i-T~SM~~ai~E-T~rRR~iQ~~yN~~h~ItP 586 (657)
T PRK05298 547 -NGKVILYADKI-TDSMQKAIDE-TERRREIQIAYNEEHGITP 586 (657)
T ss_pred -CCEEEEEECCC-CHHHHHHHHH-HHHHHHHHHHHHHHCCCCC
T ss_conf -97499981545-0999999999-9989999999999569986