HHsearch alignment for GI: 254780619 and conserved domain: PRK05298
>PRK05298 excinuclease ABC subunit B; Provisional.
Probab=96.23 E-value=0.059 Score=34.05 Aligned_cols=277 Identities=19% Similarity=0.160 Sum_probs=128.9
Q ss_pred ECCCCHHHHHHHHHHHHHHHH--------CCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEE--ECCCCCHHHHHHHHHH
Q ss_conf 447531579999999999851--------468479971521001344555430389768996--2355723566789999
Q gi|254780619|r 224 SGVTGSGKTEVYLEIVAAVLH--------LGKQVLILLPEISLTSAILERFQKRFGVKPAEW--HSSLSTSMREKIWRQV 293 (731)
Q Consensus 224 ~GvTGSGKTEVYl~li~~~L~--------~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~--HS~ls~~eR~~~w~~i 293 (731)
T Consensus 249 hyVt~~e~l~~Ai~~I~~EL~eRl~~f~~~gKl----------l--EAqRL~qRT~yDlEMl~E~GyCsGIE---NYSRh 313 (657)
T PRK05298 249 HYVTPRERLERAIESIKEELEERLKELEKEGKL----------L--EAQRLEQRTRYDLEMLRELGYCSGIE---NYSRH 313 (657)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH----------H--HHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHH
T ss_conf 768997999999999999999999999976777----------9--88899999887999999828775601---21565
Q ss_pred HCCCCEEEEECCH-HHHHHHCCCEEEEEEECCCCCCHHCCCCCC---CHHHHHHH-H-----HHH------------CCC
Q ss_conf 7199739994001-211001000136774055321000024432---24899999-7-----511------------032
Q gi|254780619|r 294 ARGAISVIVGVRS-ALFLPFKKLGLIVIDEEHDISYKQEEGILY---NARDMSIV-R-----GKI------------ESF 351 (731)
Q Consensus 294 ~~G~~~IVIGtRS-Aif~P~~nLglIIvDEEHd~sykq~~~pry---~aRdvA~~-R-----a~~------------~~~ 351 (731)
T Consensus 314 l~gR~---pGe~P~tLlDYfp~DfLl~iDESHvt-vPQi~gM-y~GDrsRK~~LVe~GFRLPSAlDNRPL~feEFe~~~~ 388 (657)
T PRK05298 314 LSGRA---PGEPPPTLLDYFPDDFLLFIDESHVT-VPQIGGM-YNGDRSRKETLVEYGFRLPSALDNRPLKFEEFEAKVP 388 (657)
T ss_pred CCCCC---CCCCCCHHHHHCCCCEEEEECCCCCC-CHHHHHH-HCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 06999---88789448875775659998321124-0878878-6231577888987057787233489978899997448
Q ss_pred CEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 10000245432467753212344412432236765433211022223322245479899999988622655179974222
Q gi|254780619|r 352 PVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNRR 431 (731)
Q Consensus 352 ~lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~~g~qvll~lnRr 431 (731)
T Consensus 389 q~iyVSATPg~--yEl~~s~~--vvEQiIRPTGLlDP~ievr-----p-~~~Q--iddl~~ei~~~~~~~er~LvttlTk 456 (657)
T PRK05298 389 QTIYVSATPGD--YELEKSGQ--VVEQIIRPTGLLDPEIEVR-----P-TKGQ--VDDLLSEIRKRVAKGERVLVTTLTK 456 (657)
T ss_pred CEEEEECCCCH--HHHHHCCC--EEEEEECCCCCCCCCEEEE-----C-CCCC--HHHHHHHHHHHHHCCCEEEEEECHH
T ss_conf 77999569858--98873667--3457777887879845996-----4-8787--9999999999963697699995459
Q ss_pred CEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCC-----CCCCCCCCEECCCCCCHHHHHHHHHHCC
Q ss_conf 00000023565434310146520121135783200002102446555-----6667874110013542899888852048
Q gi|254780619|r 432 GYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQS-----CVVCGSSGKMIACGFGIERIAEEVCEYF 506 (731)
Q Consensus 432 Gya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~-----Cp~Cg~~~~l~~~G~Gte~~~e~l~~~f 506 (731)
T Consensus 457 kmaEd------------------Lt~yl~~~~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVl----VGINLLREGL--Dl 512 (657)
T PRK05298 457 RMAED------------------LTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVL----VGINLLREGL--DI 512 (657)
T ss_pred HHHHH------------------HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEE----EEECHHHCCC--CC
T ss_conf 89999------------------999999679807996266618899999999858887589----7500220457--87
Q ss_pred CCCH-HHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5200-01023211358678999998621257657987044302311345201233000344310245
Q gi|254780619|r 507 PLAR-ISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADL 572 (731)
Q Consensus 507 p~~~-v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ 572 (731)
T Consensus 513 PEVSLVaILDADKeGFLRs~~SLi--------------QtiG--RAARN~~G~vIlYAD~iT~SM~~ 563 (657)
T PRK05298 513 PEVSLVAILDADKEGFLRSERSLI--------------QTIG--RAARNVNGKVILYADKITDSMQK 563 (657)
T ss_pred CCEEEEEEEECCCCCCCCCCCHHH--------------HHHH--HHHHCCCCEEEEEECCCCHHHHH
T ss_conf 613579887068522103520599--------------9987--88625797499981545099999