HHsearch alignment for GI: 254780619 and conserved domain: PRK05636
>PRK05636 replicative DNA helicase; Provisional.
Probab=96.62 E-value=0.077 Score=33.16 Aligned_cols=131 Identities=20% Similarity=0.292 Sum_probs=77.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHCCC-CCEE-EEEECCCCCHHHHHHHHHHH-C
Q ss_conf 19984475315799999999998-5146847997152100134455543038-9768-99623557235667899997-1
Q gi|254780619|r 220 VSLISGVTGSGKTEVYLEIVAAV-LHLGKQVLILLPEISLTSAILERFQKRF-GVKP-AEWHSSLSTSMREKIWRQVA-R 295 (731)
Q Consensus 220 ~~LL~GvTGSGKTEVYl~li~~~-L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF-~~~v-~v~HS~ls~~eR~~~w~~i~-~ 295 (731)
T Consensus 269 LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs-~~ql~~Rlla~~s~V~~~~ir~g~l~~~~~~~l~~a~~~l 347 (507)
T PRK05636 269 MIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMS-KSEIVMRLLSAEAEVRLADMRGGKMDEDAWEKLVQRLGKI 347 (507)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 799973787866899999999999876993799715699-8999999999847988788855887889999999999998
Q ss_pred CCCEEEEECCHHH-----------HHHHCCCEEEEEEECCCCCCHHCCCC--CCCHHH--HH------HHHHHHCCCCEE
Q ss_conf 9973999400121-----------10010001367740553210000244--322489--99------997511032100
Q gi|254780619|r 296 GAISVIVGVRSAL-----------FLPFKKLGLIVIDEEHDISYKQEEGI--LYNARD--MS------IVRGKIESFPVV 354 (731)
Q Consensus 296 G~~~IVIGtRSAi-----------f~P~~nLglIIvDEEHd~sykq~~~p--ry~aRd--vA------~~Ra~~~~~~li 354 (731)
T Consensus 348 ~~~pl~IdD~~~lti~~Ira~aRrlk~~~~l~livVD------YLQLm~~~~~~~~R~~ev~~ISr~LK~lAkel~vpVi 421 (507)
T PRK05636 348 AQAPIFIDDSANLTMMEIRSKARRLKQKHDLKMIVVD------YLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLI 421 (507)
T ss_pred HHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE------HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 6198899849997699999999999861799989984------5884568888766899999999999999999799889
Q ss_pred CCC
Q ss_conf 002
Q gi|254780619|r 355 LVS 357 (731)
Q Consensus 355 lgS 357 (731)
T Consensus 422 ~Ls 424 (507)
T PRK05636 422 AIS 424 (507)
T ss_pred EEC
T ss_conf 971