HHsearch alignment for GI: 254780619 and conserved domain: PRK08506
>PRK08506 replicative DNA helicase; Provisional.
Probab=94.90 E-value=0.36 Score=28.07 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=79.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC-CEEE-EEECCCCCHHHHHHHHHH-HC
Q ss_conf 61998447531579999999999851468479971521001344555430389-7689-962355723566789999-71
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFG-VKPA-EWHSSLSTSMREKIWRQV-AR 295 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~-~~v~-v~HS~ls~~eR~~~w~~i-~~ 295 (731)
T Consensus 194 dLiIIAARPsmGKTAfAlniA~~~a~~~~~V~~FSLEMs-~~ql~~Rlls~~s~V~~~~lr~g~l~~~e~~~~~~a~~~l 272 (473)
T PRK08506 194 DLIIIAARPSMGKTTLVLNMVLKALNQGKGVAFFSLEMP-AEQLMLRMLSAKTSIPLQNLRTGDLDDDEWENLSDACDEL 272 (473)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 279995079986789999999999965996589822479-9999999999728878310006899999999999999998
Q ss_pred CCCEEEEECCHHH---------H-H--HHCCCEEEEEEECCCCCCHHCCCC--CCCHHH--HH------HHHHHHCCCCE
Q ss_conf 9973999400121---------1-0--010001367740553210000244--322489--99------99751103210
Q gi|254780619|r 296 GAISVIVGVRSAL---------F-L--PFKKLGLIVIDEEHDISYKQEEGI--LYNARD--MS------IVRGKIESFPV 353 (731)
Q Consensus 296 G~~~IVIGtRSAi---------f-~--P~~nLglIIvDEEHd~sykq~~~p--ry~aRd--vA------~~Ra~~~~~~l 353 (731)
T Consensus 273 ~~~~l~IdD~~~lti~~Ira~~Rr~k~~~~~l~livID------YLQLm~~~~~~~~R~~ev~~ISr~LK~lAkEl~vPV 346 (473)
T PRK08506 273 SQKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVID------YLQLMSGSKNFKDRHLQISEISRGLKLLARELDIPI 346 (473)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE------HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 65988998899999999999999999976998789963------675546888753088999999999999999969979
Q ss_pred ECCC
Q ss_conf 0002
Q gi|254780619|r 354 VLVS 357 (731)
Q Consensus 354 ilgS 357 (731)
T Consensus 347 iaLS 350 (473)
T PRK08506 347 IALS 350 (473)
T ss_pred EEEC
T ss_conf 9970