HHsearch alignment for GI: 254780619 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=91.18 E-value=0.54 Score=26.71 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 66883789999999875204896199844753157999999999985146847997152100134455543038976899
Q gi|254780619|r 197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAE 276 (731)
Q Consensus 197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v 276 (731)
T Consensus 82 ~~l~~~~i~~La~~--~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~-----~~~L~~~L~~a~~~---- 150 (258)
T PRK09183 82 TGAPQKQLQSLRSL--SFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-----AADLLLQLSTAQRQ---- 150 (258)
T ss_pred CCCCHHHHHHHHCC--CHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHHC----
T ss_conf 86238999988258--16655886799899998689999999999998799399978-----99999999999876----
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHH-HHCCCEEEEEEECCCCCCHHCCCCCCCHHHHH-HHHHHHCCCCEE
Q ss_conf 6235572356678999971997399940012110-01000136774055321000024432248999-997511032100
Q gi|254780619|r 277 WHSSLSTSMREKIWRQVARGAISVIVGVRSALFL-PFKKLGLIVIDEEHDISYKQEEGILYNARDMS-IVRGKIESFPVV 354 (731)
Q Consensus 277 ~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~-P~~nLglIIvDEEHd~sykq~~~pry~aRdvA-~~Ra~~~~~~li 354 (731)
T Consensus 151 -----------~~~~---------------~~l~r~l~~~dLLIiDd---lG~~~~~~--~~~~~lfeli~~Rye~~S~I 199 (258)
T PRK09183 151 -----------GRYK---------------TTLQRGVMAPRLLIIDE---IGYLPFSQ--EEANLFFQVIAKRYEKGAMI 199 (258)
T ss_pred -----------CCHH---------------HHHHHHHCCCCEEEEHH---HHCCCCCH--HHHHHHHHHHHHHHCCCCEE
T ss_conf -----------8599---------------99998743465144313---31546888--89999999999985767789
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 002454324677532
Q gi|254780619|r 355 LVSATPSIESRVNGI 369 (731)
Q Consensus 355 lgSATPSles~~~~~ 369 (731)
T Consensus 200 iTSn~~-~~~W~~~f 213 (258)
T PRK09183 200 LTSNLP-FGQWDQTF 213 (258)
T ss_pred EECCCC-HHHHHHHC
T ss_conf 988999-78985651