HHsearch alignment for GI: 254780619 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=94.47 E-value=0.35 Score=28.16 Aligned_cols=90 Identities=24% Similarity=0.259 Sum_probs=61.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEE-EEECCCCCH-HHHHHHHHH-HC
Q ss_conf 619984475315799999999998514684799715210013445554303897689-962355723-566789999-71
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPA-EWHSSLSTS-MREKIWRQV-AR 295 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~-v~HS~ls~~-eR~~~w~~i-~~ 295 (731)
T Consensus 61 RivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~~a~~l----GVd~d~llv~qpd~~Eqal~i~e~Lvrs 136 (350)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL----GVDIDNLLVSQPDTGEQALEIADALVRS 136 (350)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHC----CCCHHHEEEECCCHHHHHHHHHHHHHHC
T ss_conf 089998898777999999999999975994799960002798899984----9771571785686799999999999854
Q ss_pred CCCEEEEECCHHHHHHH
Q ss_conf 99739994001211001
Q gi|254780619|r 296 GAISVIVGVRSALFLPF 312 (731)
Q Consensus 296 G~~~IVIGtRSAif~P~ 312 (731)
T Consensus 137 g~vd~IVvDSVaAL~pk 153 (350)
T PRK09354 137 GAVDLIVVDSVAALVPK 153 (350)
T ss_pred CCCCEEEEECCCCCCCH
T ss_conf 88418998253345768