HHsearch alignment for GI: 254780619 and conserved domain: PRK09401
>PRK09401 reverse gyrase; Reviewed.
Probab=99.26 E-value=3.2e-09 Score=89.67 Aligned_cols=269 Identities=20% Similarity=0.288 Sum_probs=155.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCC---C--CC
Q ss_conf 688378999999987520489619984475315799999999998514684799715210013445554303---8--97
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKR---F--GV 272 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~r---F--~~ 272 (731)
T Consensus 78 ~~w~~Qr~WakR~~~--g---~SFaiiAPTG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~ 152 (1176)
T PRK09401 78 EPWSLQRTWAKRLLL--G---ESFAIIAPTGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEKLRKLAEKVGVKV 152 (1176)
T ss_pred CCCHHHHHHHHHHHC--C---CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 984889999999866--8---97489888998888999999999986598399996888999999999999999709984
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHH-------HHCCCEEEEEEECCCCCCHHCCCC-------CC--
Q ss_conf 68996235572356678999971997399940012110-------010001367740553210000244-------32--
Q gi|254780619|r 273 KPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFL-------PFKKLGLIVIDEEHDISYKQEEGI-------LY-- 336 (731)
Q Consensus 273 ~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~-------P~~nLglIIvDEEHd~sykq~~~p-------ry-- 336 (731)
T Consensus 153 ~~~~y~~~~~~~~kee~~~~~~~gdfdIlitT~--~fl~kn~~~l~~~~f~fifvDDV-Ds~LKssKnid~~l~llGf~~ 229 (1176)
T PRK09401 153 RLLYYHSSLKKKEKEEFLERLEEGDFDILVTTS--QFLSKNFDELPKDRFDFVFVDDV-DAVLKSSKNIDKLLKLLGFSE 229 (1176)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEH--HHHHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHHHCCCCH
T ss_conf 089985677666789999886559986899856--76765487603568888999341-877752340999999839999
Q ss_pred CHHHHHHH------------------------HHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 24899999------------------------751103210000245432467753212344412432236765433211
Q gi|254780619|r 337 NARDMSIV------------------------RGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQV 392 (731)
Q Consensus 337 ~aRdvA~~------------------------Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~i 392 (731)
T Consensus 230 e~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~livsSAT~~prg~r~~lfr--eLlgF--evg~~~~~lRni 305 (1176)
T PRK09401 230 EDIEKAMELIKLKRKTEELKEEIEELEEKIREIRKKKKGVLVVSSATGRPRGIRIKLFR--ELLGF--EVGRPRFYLRNI 305 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH--HHHCC--CCCCCCCCEEEE
T ss_conf 99999999999752343444567788999998743687499997577788885389999--98298--678864230212
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCC
Q ss_conf 02222332224547989999998862265517997422200000023565434310146520121135783200002102
Q gi|254780619|r 393 IDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHS 472 (731)
Q Consensus 393 vDm~~~~~~~~~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 472 (731)
T Consensus 306 ~D~y~~~~~----~~~~~~e~v-~~lG~G--gLifv~------------------------------------------- 335 (1176)
T PRK09401 306 VDVYIEPED----LVEKLVELV-KRLGDG--GLVFVP------------------------------------------- 335 (1176)
T ss_pred EEEECCCCC----HHHHHHHHH-HHHCCC--EEEEEE-------------------------------------------
T ss_conf 577605766----889999999-984895--499976-------------------------------------------
Q ss_pred CCCCCCCCCCCCCCEECCCCCCH---HHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEH----H
Q ss_conf 44655566678741100135428---9988885204852000102321135867899999862125765798704----4
Q gi|254780619|r 473 AIYSQSCVVCGSSGKMIACGFGI---ERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQ----L 545 (731)
Q Consensus 473 ~~~~~~Cp~Cg~~~~l~~~G~Gt---e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq----~ 545 (731)
T Consensus 336 ------------------~~~g~e~~~~~~~~l~~~--g~~a~~~~~---~~----~~~le~f~~Ge~dvLvG~asyyg~ 388 (1176)
T PRK09401 336 ------------------TDYGKEYAEELKEYLESH--GIKAEAYSG---RK----KEFLEKFEEGEIDVLIGVASYYGV 388 (1176)
T ss_pred ------------------CCCCHHHHHHHHHHHHHC--CCEEEEEEC---CC----HHHHHHHHCCCCCEEEEECCCCCC
T ss_conf ------------------765889999999999976--966999605---88----668889757886489997012452
Q ss_pred HCCCCCCCCC
Q ss_conf 3023113452
Q gi|254780619|r 546 VAKGHNFPRM 555 (731)
Q Consensus 546 i~kg~~fp~v 555 (731)
T Consensus 389 lvRGiDlP~~ 398 (1176)
T PRK09401 389 LVRGIDLPER 398 (1176)
T ss_pred CCCCCCCCCE
T ss_conf 1015776411