HHsearch alignment for GI: 254780619 and conserved domain: PRK09401

>PRK09401 reverse gyrase; Reviewed.
Probab=99.26  E-value=3.2e-09  Score=89.67  Aligned_cols=269  Identities=20%  Similarity=0.288  Sum_probs=155.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCC---C--CC
Q ss_conf             688378999999987520489619984475315799999999998514684799715210013445554303---8--97
Q gi|254780619|r  198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKR---F--GV  272 (731)
Q Consensus       198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~r---F--~~  272 (731)
T Consensus        78 ~~w~~Qr~WakR~~~--g---~SFaiiAPTG~GKTtfgl~~sly~a~kgkks~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~  152 (1176)
T PRK09401         78 EPWSLQRTWAKRLLL--G---ESFAIIAPTGVGKTTFGLVMALYLAKKGKKSYIIFPTRLLVEQVVEKLRKLAEKVGVKV  152 (1176)
T ss_pred             CCCHHHHHHHHHHHC--C---CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             984889999999866--8---97489888998888999999999986598399996888999999999999999709984


Q ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHH-------HHCCCEEEEEEECCCCCCHHCCCC-------CC--
Q ss_conf             68996235572356678999971997399940012110-------010001367740553210000244-------32--
Q gi|254780619|r  273 KPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFL-------PFKKLGLIVIDEEHDISYKQEEGI-------LY--  336 (731)
Q Consensus       273 ~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~-------P~~nLglIIvDEEHd~sykq~~~p-------ry--  336 (731)
T Consensus       153 ~~~~y~~~~~~~~kee~~~~~~~gdfdIlitT~--~fl~kn~~~l~~~~f~fifvDDV-Ds~LKssKnid~~l~llGf~~  229 (1176)
T PRK09401        153 RLLYYHSSLKKKEKEEFLERLEEGDFDILVTTS--QFLSKNFDELPKDRFDFVFVDDV-DAVLKSSKNIDKLLKLLGFSE  229 (1176)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEH--HHHHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHHHCCCCH
T ss_conf             089985677666789999886559986899856--76765487603568888999341-877752340999999839999


Q ss_pred             CHHHHHHH------------------------HHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf             24899999------------------------751103210000245432467753212344412432236765433211
Q gi|254780619|r  337 NARDMSIV------------------------RGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQV  392 (731)
Q Consensus       337 ~aRdvA~~------------------------Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~i  392 (731)
T Consensus       230 e~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~livsSAT~~prg~r~~lfr--eLlgF--evg~~~~~lRni  305 (1176)
T PRK09401        230 EDIEKAMELIKLKRKTEELKEEIEELEEKIREIRKKKKGVLVVSSATGRPRGIRIKLFR--ELLGF--EVGRPRFYLRNI  305 (1176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH--HHHCC--CCCCCCCCEEEE
T ss_conf             99999999999752343444567788999998743687499997577788885389999--98298--678864230212


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCC
Q ss_conf             02222332224547989999998862265517997422200000023565434310146520121135783200002102
Q gi|254780619|r  393 IDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHS  472 (731)
Q Consensus       393 vDm~~~~~~~~~~lS~~l~~~i~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~  472 (731)
T Consensus       306 ~D~y~~~~~----~~~~~~e~v-~~lG~G--gLifv~-------------------------------------------  335 (1176)
T PRK09401        306 VDVYIEPED----LVEKLVELV-KRLGDG--GLVFVP-------------------------------------------  335 (1176)
T ss_pred             EEEECCCCC----HHHHHHHHH-HHHCCC--EEEEEE-------------------------------------------
T ss_conf             577605766----889999999-984895--499976-------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCEECCCCCCH---HHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEH----H
Q ss_conf             44655566678741100135428---9988885204852000102321135867899999862125765798704----4
Q gi|254780619|r  473 AIYSQSCVVCGSSGKMIACGFGI---ERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQ----L  545 (731)
Q Consensus       473 ~~~~~~Cp~Cg~~~~l~~~G~Gt---e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq----~  545 (731)
T Consensus       336 ------------------~~~g~e~~~~~~~~l~~~--g~~a~~~~~---~~----~~~le~f~~Ge~dvLvG~asyyg~  388 (1176)
T PRK09401        336 ------------------TDYGKEYAEELKEYLESH--GIKAEAYSG---RK----KEFLEKFEEGEIDVLIGVASYYGV  388 (1176)
T ss_pred             ------------------CCCCHHHHHHHHHHHHHC--CCEEEEEEC---CC----HHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             ------------------765889999999999976--966999605---88----668889757886489997012452


Q ss_pred             HCCCCCCCCC
Q ss_conf             3023113452
Q gi|254780619|r  546 VAKGHNFPRM  555 (731)
Q Consensus       546 i~kg~~fp~v  555 (731)
T Consensus       389 lvRGiDlP~~  398 (1176)
T PRK09401        389 LVRGIDLPER  398 (1176)
T ss_pred             CCCCCCCCCE
T ss_conf             1015776411