HHsearch alignment for GI: 254780619 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=99.80 E-value=7.7e-17 Score=147.86 Aligned_cols=348 Identities=18% Similarity=0.250 Sum_probs=200.1
Q ss_pred HHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 70999899975245572234455410235665434466668837899999998752048961998447531579999999
Q gi|254780619|r 159 ASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEI 238 (731)
Q Consensus 159 ~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~l 238 (731)
T Consensus 5 ~lgL~~~ll~aL~~~G~~~---------------------PTpIQ~~aIP~iL~G-----rDvl~~A~TGSGKTlAflLP 58 (457)
T PRK10590 5 SLGLSPDILRAVAEQGYRE---------------------PTPIQQQAIPAVLEG-----RDLMASAQTGTGKTAGFTLP 58 (457)
T ss_pred HCCCCHHHHHHHHHCCCCC---------------------CCHHHHHHHHHHHCC-----CCEEEECCCCHHHHHHHHHH
T ss_conf 3498999999999779999---------------------999999999999779-----98899889811899999999
Q ss_pred HHHHHHCC---------CCEEEEECCCHHHHHHHHHHH---CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 99985146---------847997152100134455543---038976899623557235667899997199739994001
Q gi|254780619|r 239 VAAVLHLG---------KQVLILLPEISLTSAILERFQ---KRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRS 306 (731)
Q Consensus 239 i~~~L~~G---------kqvLiLvPEI~Lt~Q~~~rl~---~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRS 306 (731)
T Consensus 59 il~~l~~~~~~~~~~~~~~aLIL~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q---~~~l~-~~~dIlVaTPG 134 (457)
T PRK10590 59 LLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ---MMKLR-GGVDVLVATPG 134 (457)
T ss_pred HHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH---HHHHC-CCCCEEEECCH
T ss_conf 999986367654456882499976879999999999997425589459999799777599---99861-89998998928
Q ss_pred HHH-------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 211-------0010001367740553210000244322489999975110321000024543246775321234441243
Q gi|254780619|r 307 ALF-------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLS 379 (731)
Q Consensus 307 Aif-------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles~~~~~~g~~~~~~l~ 379 (731)
T Consensus 135 RLldl~~~~~~~l~~v~~lVlDEAD~mL---d~gF~~di~~Il~~l--p~~rQ~llfSAT~~~~v~~l~~~----~l~~p 205 (457)
T PRK10590 135 RLLDLEHQNAVKLDQVEILVLDEADRML---DMGFIHDIRRVLAKL--PAKRQNLLFSATFSDDIKALAEK----LLHNP 205 (457)
T ss_pred HHHHHHHCCCCCCCCCEEEEEECCHHHH---CCCCHHHHHHHHHHC--CCCCEEEEEECCCCHHHHHHHHH----HCCCC
T ss_conf 8898886267765752399983705651---566536689998638--76526899950488899999999----76898
Q ss_pred CCCCCCCCCCCEECCCCC--CCCCCC-CCCC-HHHHHHHHHHHCC--CCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCC
Q ss_conf 223676543321102222--332224-5479-8999999886226--551799742220000002356543431014652
Q gi|254780619|r 380 TRYRNSALPHLQVIDMRG--QTIAQG-KSLS-PEMIDGIRHTLAR--NEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSC 453 (731)
Q Consensus 380 ~R~~~~~~P~i~ivDm~~--~~~~~~-~~lS-~~l~~~i~~~l~~--g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~ 453 (731)
T Consensus 206 ~--------~i~v~~~~~~~~~i~q~~~~v~~~~k~~~L~~ll~~~~~~~~iIF~~tk---------------------- 255 (457)
T PRK10590 206 L--------EIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTK---------------------- 255 (457)
T ss_pred E--------EEEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECHH----------------------
T ss_conf 8--------9996367665613048999956678999999998615866335884119----------------------
Q ss_pred EEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 01211357832000021024465556667874110013542899888852048520001023211358678999998621
Q gi|254780619|r 454 WLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIA 533 (731)
Q Consensus 454 ~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~ 533 (731)
T Consensus 256 ---------------------------------------~~a~~l~~~L~~~--g~~~~~lHg~~s--q~~R~~~l~~F~ 292 (457)
T PRK10590 256 ---------------------------------------HGANHLAEQLNKD--GIRSAAIHGNKS--QGARTRALADFK 292 (457)
T ss_pred ---------------------------------------HHHHHHHHHHHHC--CCCCEEEECCCC--HHHHHHHHHHHH
T ss_conf ---------------------------------------9999999998556--998232324789--999999999998
Q ss_pred CCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-CHHHHH
Q ss_conf 2576579870443023113452012330003443102455789999987543110256678868999932986-488899
Q gi|254780619|r 534 KGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPT-HPVMQA 612 (731)
Q Consensus 534 ~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~iQt~~p~-~~~~~~ 612 (731)
T Consensus 293 ~g~~~vLVaTDvaaRGiDi~~V~~VInyD~------P~------~~e~YvHRiGRTGRaG~~G~ait~-v~~~e~~~~~- 358 (457)
T PRK10590 293 SGDIRVLVATDIAARGLDIEELPHVVNYEL------PN------VPEDYVHRIGRTGRAAATGEALSL-VCVDEHKLLR- 358 (457)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCEEEEECC------CC------CHHHEECCCCCCCCCCCCEEEEEE-ECHHHHHHHH-
T ss_conf 699829995770115566356887999389------99------744500226706058995369998-6689999999-
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 995897999999999999818888
Q gi|254780619|r 613 LVSGDADSFYESEIRARESVNLPP 636 (731)
Q Consensus 613 ~~~~d~~~f~~~el~~R~~~~~PP 636 (731)
T Consensus 359 ----~ie~~~~~~~~~~~~~~~~~ 378 (457)
T PRK10590 359 ----DIEKLLKKEIPRIAIPGYEP 378 (457)
T ss_pred ----HHHHHHCCCCCCCCCCCCCC
T ss_conf ----99999779887403788787