HHsearch alignment for GI: 254780619 and conserved domain: PRK11057
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional.
Probab=99.66 E-value=2.8e-13 Score=120.66 Aligned_cols=319 Identities=21% Similarity=0.289 Sum_probs=203.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 68837899999998752048961998447531579999999999851468479971521001344555430389768996
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEW 277 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~ 277 (731)
T Consensus 25 ~Fr~~Q~e~i~~~l~g~----D-~l~~mpTG~GKSlcyQ-l--Pal~~~g~tiVisPLisLm~DQv~~L~~~-gi~a~~l 95 (607)
T PRK11057 25 QFRPGQEEIIDTVLSGR----D-CLVVMPTGGGKSLCYQ-I--PALVLDGLTLVVSPLISLMKDQVDQLLAN-GVAAACL 95 (607)
T ss_pred CCCHHHHHHHHHHHCCC----C-EEEECCCCCHHHHHHH-H--HHHHCCCCEEEECCHHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 34576999999998699----8-8998789955979999-9--99877998899868799999999999978-9929995
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEECCHHH-------HHHHCCCEEEEEEECCCCC-CHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 2355723566789999719973999400121-------1001000136774055321-0000244322489999975110
Q gi|254780619|r 278 HSSLSTSMREKIWRQVARGAISVIVGVRSAL-------FLPFKKLGLIVIDEEHDIS-YKQEEGILYNARDMSIVRGKIE 349 (731)
Q Consensus 278 HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAi-------f~P~~nLglIIvDEEHd~s-ykq~~~pry~aRdvA~~Ra~~~ 349 (731)
T Consensus 96 ~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAHcvs~WGhdFRp--~Y~~l~~l~~~~~ 173 (607)
T PRK11057 96 NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP--EYAALGQLRQRFP 173 (607)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCHH--HHHHHHHHHHHCC
T ss_conf 69999999999999997599879998855856978999997188664885306667541550038--8999999999769
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 32100002454324677532123444124322---367654332110222233222454798999999886226551799
Q gi|254780619|r 350 SFPVVLVSATPSIESRVNGISRRYHSVHLSTR---YRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLL 426 (731)
Q Consensus 350 ~~~lilgSATPSles~~~~~~g~~~~~~l~~R---~~~~~~P~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~~g~qvll 426 (731)
T Consensus 174 ~~p~~AlTATAt~~v~~di----~~~L~l~~~~~~~~~f~RpNl~~-~v~~~----~~~~-~~~~~~~~~~--------- 234 (607)
T PRK11057 174 TLPFMALTATADDTTRQDI----VRLLGLNDPLIQISSFDRPNIRY-MLMEK----FKPL-DQLMRYVQEQ--------- 234 (607)
T ss_pred CCCEEEEEECCCHHHHHHH----HHHHCCCCCCEEECCCCCCCCEE-EEEEC----CCHH-HHHHHHHHHC---------
T ss_conf 9974899963687899999----99708999807825778887414-55544----7739-9999998706---------
Q ss_pred EECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCC
Q ss_conf 74222000000235654343101465201211357832000021024465556667874110013542899888852048
Q gi|254780619|r 427 FLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYF 506 (731)
Q Consensus 427 ~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~f 506 (731)
T Consensus 235 ----~~~sgIIY-------------------------------------------c~tr-------k~~e~la~~L~~~- 259 (607)
T PRK11057 235 ----RGKSGIIY-------------------------------------------CNSR-------AKVEDTAARLQSR- 259 (607)
T ss_pred ----CCCCEEEE-------------------------------------------ECCH-------HHHHHHHHHHHHC-
T ss_conf ----89977999-------------------------------------------6928-------9999999999857-
Q ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52000102321135867899999862125765798704430231134520123300034431024557899999875431
Q gi|254780619|r 507 PLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVT 586 (731)
Q Consensus 507 p~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~ 586 (731)
T Consensus 260 -G~~~~~YHagl--~~~~R~~~q~~f~~~~~~vivAT~AFGMGIdk~dVR~ViH~~~P--------~s~e~----yyQE~ 324 (607)
T PRK11057 260 -GISAAAYHAGL--DNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIP--------RNIES----YYQET 324 (607)
T ss_pred -CCCEEECCCCC--CHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCEEEECCCC--------CCHHH----HHHHH
T ss_conf -97545305899--97899999998756887589975011057677776679977899--------99999----99988
Q ss_pred HCCCCCCCCCEEEEEECCCCC-HHHHHHHHCC
Q ss_conf 102566788689999329864-8889999589
Q gi|254780619|r 587 GRAGRFGLKSLGLIQAYQPTH-PVMQALVSGD 617 (731)
Q Consensus 587 gRagr~~~~g~v~iQt~~p~~-~~~~~~~~~d 617 (731)
T Consensus 325 GRAGRDG~~a~c~l~-y~~~D~~~~~~~i~~~ 355 (607)
T PRK11057 325 GRAGRDGLPAEAMLF-YDPADMAWLRRCLEEK 355 (607)
T ss_pred HHCCCCCCCCEEEEE-ECHHHHHHHHHHHHCC
T ss_conf 635258985418998-5687899999998548