HHsearch alignment for GI: 254780619 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=99.76 E-value=3.3e-16 Score=143.03 Aligned_cols=315 Identities=20% Similarity=0.249 Sum_probs=183.5
Q ss_pred HHHCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 77099989997524557223445541023566543446666883789999999875204896199844753157999999
Q gi|254780619|r 158 RASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLE 237 (731)
Q Consensus 158 ~~~~~s~~~i~~L~~kglI~~~~~~~~~~~~~~~~~~~~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~ 237 (731)
T Consensus 9 ~~lgL~~~ll~aL~~~Gf~---------------------~PTpIQ~~aIP~iL~G-----kDvi~~AqTGSGKTlAFlL 62 (629)
T PRK11634 9 ADLGLKAPILEALNDLGYE---------------------KPSPIQAECIPHLLNG-----RDVLGMAQTGSGKTAAFSL 62 (629)
T ss_pred HHCCCCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHH
T ss_conf 7679899999999987999---------------------9999999999999679-----9889978884789999999
Q ss_pred HHHHHHHC---CCCEEEEECCCHHHHHHHHHHHCC---C-CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH-
Q ss_conf 99998514---684799715210013445554303---8-976899623557235667899997199739994001211-
Q gi|254780619|r 238 IVAAVLHL---GKQVLILLPEISLTSAILERFQKR---F-GVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF- 309 (731)
Q Consensus 238 li~~~L~~---GkqvLiLvPEI~Lt~Q~~~rl~~r---F-~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif- 309 (731)
T Consensus 63 PiL~~l~~~~~~pqaLIL~PTRELA~QV~~~~~~l~~~~~~i~v~~l~GG~~----~~~q~~~L~~g~~IVVgTPGRL~d 138 (629)
T PRK11634 63 PLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR----YDVQLRALRQGPQIVVGTPGRLLD 138 (629)
T ss_pred HHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC----HHHHHHHHCCCCCEEEECHHHHHH
T ss_conf 9999866236898689978998999999999999972179977999989977----899999862799999969899999
Q ss_pred ------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHH-HCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ------00100013677405532100002443224899999751-10321000024543246775321234441243223
Q gi|254780619|r 310 ------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGK-IESFPVVLVSATPSIESRVNGISRRYHSVHLSTRY 382 (731)
Q Consensus 310 ------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~-~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~ 382 (731)
T Consensus 139 ~l~~~~l~L~~l~~lVLDEAD-~mL--~~gF~---~di~~Il~~lp~~~Qt~LfSATmp~~i~~la~~--~--l~~P~-- 206 (629)
T PRK11634 139 HLKRGTLDLSKLSGLVLDEAD-EML--RMGFI---EDVETIMAQIPEGHQTALFSATMPEAIRRITRR--F--MKEPQ-- 206 (629)
T ss_pred HHHCCCCCHHHCCEEEEECHH-HHC--CCCCH---HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH--H--CCCCE--
T ss_conf 997296412007678986715-533--63659---999999986740314466631465999999998--7--56987--
Q ss_pred CCCCCCCCEECCCCCCCC-----CCCCC-C-CHHHHHHHHHHHC--CCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCC
Q ss_conf 676543321102222332-----22454-7-9899999988622--6551799742220000002356543431014652
Q gi|254780619|r 383 RNSALPHLQVIDMRGQTI-----AQGKS-L-SPEMIDGIRHTLA--RNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSC 453 (731)
Q Consensus 383 ~~~~~P~i~ivDm~~~~~-----~~~~~-l-S~~l~~~i~~~l~--~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~ 453 (731)
T Consensus 207 ------~i~i---~~~~~t~~~i~q~~~~v~~~~K~~aL~~~L~~~~~~~~IIF~~------------------------ 253 (629)
T PRK11634 207 ------EVRI---QSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVR------------------------ 253 (629)
T ss_pred ------EEEE---CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEE------------------------
T ss_conf ------9740---4555557763059999652457999999986158884899982------------------------
Q ss_pred EEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 01211357832000021024465556667874110013542899888852048520001023211358678999998621
Q gi|254780619|r 454 WLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIA 533 (731)
Q Consensus 454 ~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~~~~~~ 533 (731)
T Consensus 254 ---------------------------Tk----------~~~~~l~~~L~~~--g~~~~~LHgdm~--q~~R~~~l~~Fr 292 (629)
T PRK11634 254 ---------------------------TK----------NATLEVAEALERN--GYNSAALNGDMN--QALREQTLERLK 292 (629)
T ss_pred ---------------------------CH----------HHHHHHHHHHHHC--CCCEEEEECCCC--HHHHHHHHHHHH
T ss_conf ---------------------------27----------8899999999976--996576568999--999999999997
Q ss_pred CCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 2576579870443023113452012330003443102455789999987543110256678868999
Q gi|254780619|r 534 KGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLI 600 (731)
Q Consensus 534 ~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~g~v~i 600 (731)
T Consensus 293 ~g~~~ILVaTDvaARGLDi~~V~~VINyDl------P~------d~e~YVHRiGRTGRaGr~G~Ait 347 (629)
T PRK11634 293 DGRLDILIATDVAARGLDVERISLVVNYDI------PM------DSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCEEEEECC------CC------CHHHCCCCCCCCCCCCCCEEEEE
T ss_conf 599988987862105577256888999689------89------74340102583316899646999