HHsearch alignment for GI: 254780619 and conserved domain: PRK12377
>PRK12377 putative replication protein; Provisional.
Probab=96.73 E-value=0.027 Score=36.64 Aligned_cols=95 Identities=20% Similarity=0.360 Sum_probs=66.1
Q ss_pred CCCCCCHHHHHHHHHHH---HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC
Q ss_conf 66668837899999998---752048961998447531579999999999851468479971521001344555430389
Q gi|254780619|r 195 SLPILDKNQQDVVEQVV---PLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFG 271 (731)
Q Consensus 195 ~~~~Lt~eQ~~a~~~i~---~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~ 271 (731)
T Consensus 75 ny~~~~~~~~~a~~~a~~~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~sVlF~t-----~~dLv~~L~~a~~ 149 (248)
T PRK12377 75 NYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----VPDVMSRLHESYD 149 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE-----HHHHHHHHHHHHH
T ss_conf 56457878999999999999987318860899899998788999999999998799699988-----9999999999998
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCEEEEEEEC
Q ss_conf 7689962355723566789999719973999400121100100013677405
Q gi|254780619|r 272 VKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEE 323 (731)
Q Consensus 272 ~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~P~~nLglIIvDEE 323 (731)
T Consensus 150 ~-----------------------g~------~~~k~l~~l~~~dLLIIDEl 172 (248)
T PRK12377 150 N-----------------------GQ------SGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred C-----------------------CC------CHHHHHHHHHCCCEEEEHHC
T ss_conf 4-----------------------85------09999999733898986000