HHsearch alignment for GI: 254780619 and conserved domain: PRK12422
>PRK12422 chromosomal replication initiation protein; Provisional.
Probab=94.09 E-value=0.21 Score=29.77 Aligned_cols=105 Identities=19% Similarity=0.308 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 89619984475315799999999998514-68479971521001344555430389768996235572356678999971
Q gi|254780619|r 217 GFAVSLISGVTGSGKTEVYLEIVAAVLHL-GKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVAR 295 (731)
Q Consensus 217 ~f~~~LL~GvTGSGKTEVYl~li~~~L~~-GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~ 295 (731)
T Consensus 140 ~yNPLfIyG~~GlGKTHL-L~AIgn~i~~~~~kV~Yvtae~-F~~~~v~a---------------------------i~~ 190 (455)
T PRK12422 140 PFNPIYLFGPEGSGKTHL-MQAAVSALRESGGKILYVSSEL-FTEHLVSA---------------------------IRS 190 (455)
T ss_pred CCCCEEEECCCCCCHHHH-HHHHHHHHHCCCCEEEEECHHH-HHHHHHHH---------------------------HHC
T ss_conf 678758878999978999-9999998537998699974999-99999999---------------------------975
Q ss_pred CCCEEEEECCHHHH-HHHCCCEEEEEEECCCCCCHHC-CCCCCCHHHHHHHHHHHCCCCEECCCCCCCH
Q ss_conf 99739994001211-0010001367740553210000-2443224899999751103210000245432
Q gi|254780619|r 296 GAISVIVGVRSALF-LPFKKLGLIVIDEEHDISYKQE-EGILYNARDMSIVRGKIESFPVVLVSATPSI 362 (731)
Q Consensus 296 G~~~IVIGtRSAif-~P~~nLglIIvDEEHd~sykq~-~~pry~aRdvA~~Ra~~~~~~lilgSATPSl 362 (731)
T Consensus 191 ~~~--------~~Fr~~yr~~DvLLIDDIQfl~gK~~tqeEff~tfN~L~----~~~KQIVitsDr~P~ 247 (455)
T PRK12422 191 GEM--------QRFRSFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLH----TEGKLIVISSSYAPG 247 (455)
T ss_pred CCH--------HHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHH----HCCCEEEEECCCCHH
T ss_conf 889--------999999963887763147887284889999999999999----859969996898957