HHsearch alignment for GI: 254780619 and conserved domain: PRK13826
>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=92.06 E-value=1 Score=24.64 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECC----------CHHHHHHHHH
Q ss_conf 6688378999999987520489619984475315799999999998514-6847997152----------1001344555
Q gi|254780619|r 197 PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL-GKQVLILLPE----------ISLTSAILER 265 (731)
Q Consensus 197 ~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~-GkqvLiLvPE----------I~Lt~Q~~~r 265 (731)
T Consensus 380 ~~Ls~EQ~~Av~hiT~~----~~Ia~VvG~AGaGKStm-L~aAReawEa~GyrV~GaALsGkAAegLe~~sGI~SrTlAs 454 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGA----ERIAAVIGRAGAGKTTM-MKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIASRTLSS 454 (1102)
T ss_pred CCCCHHHHHHHHHHCCC----CCEEEEEECCCCCHHHH-HHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 13899999999985378----86689984288878899-99999999977977980150078999775346953033899
Q ss_pred HH-----CC--CC-CEEE-EEECCCCCHHHHHHHHHHH--CCCCEEEEEC
Q ss_conf 43-----03--89-7689-9623557235667899997--1997399940
Q gi|254780619|r 266 FQ-----KR--FG-VKPA-EWHSSLSTSMREKIWRQVA--RGAISVIVGV 304 (731)
Q Consensus 266 l~-----~r--F~-~~v~-v~HS~ls~~eR~~~w~~i~--~G~~~IVIGt 304 (731)
T Consensus 455 ~e~~w~~gr~~L~~~dVlVIDEAGMVgsrqmarvl~~ae~aGAKvVLVGD 504 (1102)
T PRK13826 455 WELRWNQGRDQLDNKTVFVLDEAGMVSSRQMALFVEAVTRAGAKLVLVGD 504 (1102)
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99874358655678738998455565579999999999975998999688