HHsearch alignment for GI: 254780619 and conserved domain: TIGR00631

>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=95.03  E-value=0.063  Score=33.85  Aligned_cols=146  Identities=21%  Similarity=0.332  Sum_probs=104.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             88378999999987520489619984475315799999999998514-68479971521001344555430389768996
Q gi|254780619|r  199 LDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL-GKQVLILLPEISLTSAILERFQKRFGVKPAEW  277 (731)
Q Consensus       199 Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~-GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~  277 (731)
T Consensus        10 P~GDQP~AI~~L~~~l~~G~~~QtLLGvTGsGKT----FT~AnVIa~~~rPTLV~aHNKTLAAQLY~EfKefFPeNAVEY   85 (667)
T TIGR00631        10 PAGDQPKAIAKLVEGLEAGEKEQTLLGVTGSGKT----FTMANVIAQVQRPTLVLAHNKTLAAQLYNEFKEFFPENAVEY   85 (667)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHH----HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             6788189999999998568871478532148627----889899998479849985777679999999986386772452


Q ss_pred             E-----------------------CCCC---CHHHHHHHHHHHCCCCEEEEECCHHHH---HHHCCCEEEEE-EECCCCC
Q ss_conf             2-----------------------3557---235667899997199739994001211---00100013677-4055321
Q gi|254780619|r  278 H-----------------------SSLS---TSMREKIWRQVARGAISVIVGVRSALF---LPFKKLGLIVI-DEEHDIS  327 (731)
Q Consensus       278 H-----------------------S~ls---~~eR~~~w~~i~~G~~~IVIGtRSAif---~P~~nLglIIv-DEEHd~s  327 (731)
T Consensus        86 FvSYYDYYQPEAYvP~~DtyIEKdaSINdeIerlR~SAT~SLl~RrDVIVVASVScIYGLG~P~~Y~~~~~~l~vG~~~~  165 (667)
T TIGR00631        86 FVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRLSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEID  165 (667)
T ss_pred             EEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHCCEEEEEECCCCC
T ss_conf             55203237873214798841304553004676778898886423787899987552068888255642278654078558


Q ss_pred             CHHC----CCCCCCHHHHHHHHHHH
Q ss_conf             0000----24432248999997511
Q gi|254780619|r  328 YKQE----EGILYNARDMSIVRGKI  348 (731)
Q Consensus       328 ykq~----~~pry~aRdvA~~Ra~~  348 (731)
T Consensus       166 ~~~ll~~LV~lqY~RNd~~f~RG~F  190 (667)
T TIGR00631       166 RRELLRRLVELQYERNDVDFQRGTF  190 (667)
T ss_pred             HHHHHHHHHHHCEEECCEECCCCCE
T ss_conf             8999988634030571234057712