HHsearch alignment for GI: 254780619 and conserved domain: TIGR00643

>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00  E-value=2.2e-42  Score=343.27  Aligned_cols=354  Identities=23%  Similarity=0.346  Sum_probs=277.4

Q ss_pred             CCC-CCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCC-
Q ss_conf             666-68837899999998752048-961998447531579999999999851468479971521001344555430389-
Q gi|254780619|r  195 SLP-ILDKNQQDVVEQVVPLCTKG-FAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFG-  271 (731)
Q Consensus       195 ~~~-~Lt~eQ~~a~~~i~~~~~~~-f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~-  271 (731)
T Consensus       303 ~LPF~LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p  382 (721)
T TIGR00643       303 SLPFELTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIESGYQVALMAPTEILAEQHYDSLRNLLAP  382 (721)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             28887767789999999986147875322211010663899999999999846980999177689999999999996235


Q ss_pred             --CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH---HHHCCCEEEEEEECCCCCCHHCCCCCC--CHHHHHHH
Q ss_conf             --76899623557235667899997199739994001211---001000136774055321000024432--24899999
Q gi|254780619|r  272 --VKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF---LPFKKLGLIVIDEEHDISYKQEEGILY--NARDMSIV  344 (731)
Q Consensus       272 --~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif---~P~~nLglIIvDEEHd~sykq~~~pry--~aRdvA~~  344 (731)
T Consensus       383 ~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTH-ALiqe~vef~~L~lVIiDEQH----------RFGV~QR~~L~~  451 (721)
T TIGR00643       383 LGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTH-ALIQEKVEFKRLGLVIIDEQH----------RFGVEQRKKLRE  451 (721)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHH-HHHHHHHHHHCCCEEEEECCC----------CCHHHHHHHHHH
T ss_conf             485788861566787899999998639520573313-554521443147748993233----------560789999998


Q ss_pred             HHHHC----CCC-EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             75110----321-0000245432467753212344412432236765433211022223322245479899999988622
Q gi|254780619|r  345 RGKIE----SFP-VVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLA  419 (731)
Q Consensus       345 Ra~~~----~~~-lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~  419 (731)
T Consensus       452 KG~~~~~~G~~PH~L~MtATPIPRTLALt~yGDld~S~I~elP~GR~pi~T~~~--~~~--~~~aW-~~~v~~~~~~E~~  526 (721)
T TIGR00643       452 KGQEGSMIGFAPHVLVMTATPIPRTLALTVYGDLDVSIIDELPPGRKPITTYLI--KHK--EKGAW-IDIVYEFIEEEIA  526 (721)
T ss_pred             HHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEE--ECC--CCCCC-HHHHHHHHHHHHH
T ss_conf             622068867777764663788147899776500003343168545933899888--427--88775-6899999999983


Q ss_pred             CCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEE-CCCCCCHHHH
Q ss_conf             655179974222000000235654343101465201211357832000021024465556667874110-0135428998
Q gi|254780619|r  420 RNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKM-IACGFGIERI  498 (731)
Q Consensus       420 ~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l-~~~G~Gte~~  498 (731)
T Consensus       527 ~GrQaYvv~-------------------------PlI--------------------------~ESE~lp~lk--~A~~~  553 (721)
T TIGR00643       527 KGRQAYVVY-------------------------PLI--------------------------EESEKLPDLK--AAEAL  553 (721)
T ss_pred             CCCCEEEEE-------------------------CCC--------------------------CCCCCCCHHH--HHHHH
T ss_conf             289089996-------------------------440--------------------------3200471689--99999


Q ss_pred             HHHHHHCC-CCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88852048-52000102321135867899999862125765798704430231134520123300034431024557899
Q gi|254780619|r  499 AEEVCEYF-PLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSER  577 (731)
Q Consensus       499 ~e~l~~~f-p~~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~  577 (731)
T Consensus       554 ~~~l~~~f~~~~~v~LlHGrm-~~~e-K~~vm~~F~~~~~~ILVsTTVIEVGVDVPnAtvMVIe~Ae------------R  619 (721)
T TIGR00643       554 YERLKKAFLPKYNVGLLHGRM-KSDE-KEAVMEEFREGEVDILVSTTVIEVGVDVPNATVMVIEDAE------------R  619 (721)
T ss_pred             HHHHHHHHCCCCEEEEECCCC-CHHH-HHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCEEEEECCC------------H
T ss_conf             999888612210011330689-8478-9999998521583699997689998617977278886655------------1


Q ss_pred             H-HHHHHHHHHCCCCCCCCCEEEEEEC----CCCC-HHHHHH--H--HCCHHHHHHHHHHHHHH
Q ss_conf             9-9987543110256678868999932----9864-888999--9--58979999999999998
Q gi|254780619|r  578 T-FQLLSQVTGRAGRFGLKSLGLIQAY----QPTH-PVMQAL--V--SGDADSFYESEIRARES  631 (731)
Q Consensus       578 ~-~qll~qv~gRagr~~~~g~v~iQt~----~p~~-~~~~~~--~--~~d~~~f~~~el~~R~~  631 (731)
T Consensus       620 FGLSQLHQLRGRVGRG~~~SyC~L~~kdei~~p~~~~~~~RL~~~~~~~DGF~iAE~DL~lRGP  683 (721)
T TIGR00643       620 FGLSQLHQLRGRVGRGDHQSYCLLVYKDEIKNPKSESAKKRLRVMAETLDGFVIAEEDLKLRGP  683 (721)
T ss_pred             HHHHHHHHHCEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf             0368887635001268975079981253257888646899999985155606778875532588