HHsearch alignment for GI: 254780619 and conserved domain: TIGR01587
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=99.00 E-value=4.1e-08 Score=81.13 Aligned_cols=328 Identities=22% Similarity=0.238 Sum_probs=180.4
Q ss_pred EEEECCCCHHHHHHHHHHHHH---HHHCCC--CEEEEECCCHHHHHHHHHHHC----CCCC--EEEEEEC------CCC-
Q ss_conf 998447531579999999999---851468--479971521001344555430----3897--6899623------557-
Q gi|254780619|r 221 SLISGVTGSGKTEVYLEIVAA---VLHLGK--QVLILLPEISLTSAILERFQK----RFGV--KPAEWHS------SLS- 282 (731)
Q Consensus 221 ~LL~GvTGSGKTEVYl~li~~---~L~~Gk--qvLiLvPEI~Lt~Q~~~rl~~----rF~~--~v~v~HS------~ls- 282 (731)
T Consensus 2 ~v~~APTG~GKTe~aL~~A~~sah~~k~~~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~~~~~~~ssrfnh~~~~i 81 (424)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALKSAHLIKKQKADKVIFALPTRVTINAMYRRLKESASHLFGSPELVLLLHSSRFNHLASSI 81 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 68861789987899999998636664224440101220268889999999998677541785432334552267899999
Q ss_pred ------CHHHHHHHHHH----HCCCCEEEE----------------ECCHHHH----HHHCCC--EEEEEEECCCCCCHH
Q ss_conf ------23566789999----719973999----------------4001211----001000--136774055321000
Q gi|254780619|r 283 ------TSMREKIWRQV----ARGAISVIV----------------GVRSALF----LPFKKL--GLIVIDEEHDISYKQ 330 (731)
Q Consensus 283 ------~~eR~~~w~~i----~~G~~~IVI----------------GtRSAif----~P~~nL--glIIvDEEHd~sykq 330 (731)
T Consensus 82 k~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ssGs~~~~~~~~~~~~~S~~i~DE~h--~y-- 157 (424)
T TIGR01587 82 KLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGESSGSFGHYEITLASIANSLIIFDEVH--AY-- 157 (424)
T ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH--HH--
T ss_conf 98776304782799999985224212101317885341220000005534452056888877776765625367--77--
Q ss_pred CCCCCCCHHHHHHHHHH-HCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCE------ECCC--------
Q ss_conf 02443224899999751-10321000024543246775321234441243223676543321------1022--------
Q gi|254780619|r 331 EEGILYNARDMSIVRGK-IESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQ------VIDM-------- 395 (731)
Q Consensus 331 ~~~pry~aRdvA~~Ra~-~~~~~lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~------ivDm-------- 395 (731)
T Consensus 158 ~~~~~~~~~l~~L~~~~~~~~~~~~lMsATlP~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~GvnGaqrfdllahPe~~~ 236 (424)
T TIGR01587 158 EEYTLALTILAALEVLKIDNDVKILLMSATLPRE-LKKFLKEYLEKIEYVEENELLDLKEVEGVNGAQRFDLLAHPEFKE 236 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHH
T ss_conf 6425555699999999987389889984056757-899999873104763333557866435464202333321720210
Q ss_pred -CCCCC-----CCCCCCCHHHHHHH-HHHHCCCCEEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECH
Q ss_conf -22332-----22454798999999-886226551799742220000002356543431014652012113578320000
Q gi|254780619|r 396 -RGQTI-----AQGKSLSPEMIDGI-RHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQ 468 (731)
Q Consensus 396 -~~~~~-----~~~~~lS~~l~~~i-~~~l~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~ 468 (731)
T Consensus 237 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~NtV~~A~~-------------------------------- 284 (424)
T TIGR01587 237 KRFENHRISLIEKDKVGEISSLERLLLEELKKGGKVLIIVNTVDRAQE-------------------------------- 284 (424)
T ss_pred HHHHCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHH--------------------------------
T ss_conf 022157642134320331346666778741577866999854389999--------------------------------
Q ss_pred HHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCH-HHHCCC-----CCCCCHHHHHHHHHHHCC-----CCC
Q ss_conf 210244655566678741100135428998888520485200-010232-----113586789999986212-----576
Q gi|254780619|r 469 CGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLAR-ISILSS-----DLEGGGGRLQLQLSAIAK-----GEI 537 (731)
Q Consensus 469 Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~fp~~~-v~~~d~-----d~~~~~~~~~~~~~~~~~-----~~~ 537 (731)
T Consensus 285 -----------------------------~Y~~~kE~~p~~~~~~L~HsRF~~~DR-~~KEde~~~l~e~~~S~~~~~~~ 334 (424)
T TIGR01587 285 -----------------------------FYQKLKEKAPELEEVILLHSRFTEKDR-AKKEDEAELLKELKKSAWKDNEK 334 (424)
T ss_pred -----------------------------HHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf -----------------------------999985126520021244044770036-67767999999851013544577
Q ss_pred CEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-C-----EEEEEECCCCCHHHH
Q ss_conf 5798704430231134520123300034431024557899999875431102566788-6-----899993298648889
Q gi|254780619|r 538 DIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLK-S-----LGLIQAYQPTHPVMQ 611 (731)
Q Consensus 538 ~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~~pd~ra~E~~~qll~qv~gRagr~~~~-g-----~v~iQt~~p~~~~~~ 611 (731)
T Consensus 335 ~v~V~TQv~E~SlD---------~s~D~~iT--e~a----P~d~LiQR~GR~~R~~~~~~d~~~~~~y~~~~~~~~~e~a 399 (424)
T TIGR01587 335 FVIVATQVIEVSLD---------ISVDVMIT--ELA----PIDSLIQRLGRLNRYGRKIGDIENREVYILTILLEDKELA 399 (424)
T ss_pred EEEEEEEEEEEEEE---------CCCCHHHH--HCC----CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 06998787888642---------04441343--115----0123355421110113565788987203785257888756
Q ss_pred HHHHCCHHHHHHHHHHHHHH
Q ss_conf 99958979999999999998
Q gi|254780619|r 612 ALVSGDADSFYESEIRARES 631 (731)
Q Consensus 612 ~~~~~d~~~f~~~el~~R~~ 631 (731)
T Consensus 400 -ry~~~~~~~~~~~~~~~T~ 418 (424)
T TIGR01587 400 -RYKDDRHLVYPYELVERTI 418 (424)
T ss_pred -CCCCCCCCCCCHHHHHHHH
T ss_conf -4224564116567789899