HHsearch alignment for GI: 254780619 and conserved domain: TIGR01970
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=94.07 E-value=0.53 Score=26.78 Aligned_cols=290 Identities=21% Similarity=0.333 Sum_probs=162.0
Q ss_pred EEEEECCCCHHHH-HHHHHHHHHHHHCCCCEEEEECC-C---HHHHHHHHHHHCCCCCEEEE---EECCCCCHHHHHHHH
Q ss_conf 1998447531579-99999999985146847997152-1---00134455543038976899---623557235667899
Q gi|254780619|r 220 VSLISGVTGSGKT-EVYLEIVAAVLHLGKQVLILLPE-I---SLTSAILERFQKRFGVKPAE---WHSSLSTSMREKIWR 291 (731)
Q Consensus 220 ~~LL~GvTGSGKT-EVYl~li~~~L~~GkqvLiLvPE-I---~Lt~Q~~~rl~~rF~~~v~v---~HS~ls~~eR~~~w~ 291 (731)
T Consensus 19 ~vvL~APpGAGKsT~~PLaLL~~pW~~~~kIimLEPRRlAAR~~A~rlA~~LgE~VG~tVGyRvR~enkVs~~TRlEv-- 96 (858)
T TIGR01970 19 QVVLEAPPGAGKSTAVPLALLDAPWLIGGKIIMLEPRRLAARSAAQRLASQLGEEVGDTVGYRVRLENKVSARTRLEV-- 96 (858)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEE--
T ss_conf 506416722471105889976626434880787474478999999999997088988620405771132587754578--
Q ss_pred HHHCCCCEEEEECCHHHHHH-HCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCC--CCEECCCCCCCHHHHHHH
Q ss_conf 99719973999400121100-100013677405532100002443224899999751103--210000245432467753
Q gi|254780619|r 292 QVARGAISVIVGVRSALFLP-FKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIES--FPVVLVSATPSIESRVNG 368 (731)
Q Consensus 292 ~i~~G~~~IVIGtRSAif~P-~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~--~~lilgSATPSles~~~~ 368 (731)
T Consensus 97 -VTEG-----iLTRMlQ~DP~L~GVg~liFDEFHERsL~aDLaLAL-aLdV--Qs~LRdDPPLkil~MSATLdg~rLs~L 167 (858)
T TIGR01970 97 -VTEG-----ILTRMLQDDPELEGVGLLIFDEFHERSLDADLALAL-ALDV--QSALRDDPPLKILIMSATLDGERLSSL 167 (858)
T ss_pred -EECC-----HHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHH-HHHH--HHHHCCCCCCEEHHCCCCCHHHHHHHH
T ss_conf -7232-----687740168884535232311022434678899999-8853--343106864000000026327999974
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEECCCCCCC-CCCCCCCCHHHHHHHHHHHCCC-CE----EEEEECCCCEEHHCCCCCC
Q ss_conf 2123444124322367654332110222233-2224547989999998862265-51----7997422200000023565
Q gi|254780619|r 369 ISRRYHSVHLSTRYRNSALPHLQVIDMRGQT-IAQGKSLSPEMIDGIRHTLARN-EQ----TLLFLNRRGYAPLTLCQVC 442 (731)
Q Consensus 369 ~~g~~~~~~l~~R~~~~~~P~i~ivDm~~~~-~~~~~~lS~~l~~~i~~~l~~g-~q----vll~lnRrGya~~~~C~~C 442 (731)
T Consensus 168 L~~-Ap~v~S----~GR~fP----Ve~rY~~P~~~~e~l~~~~~r~v~~~La~~~GSGPqd~LvFLPG~aE--------- 229 (858)
T TIGR01970 168 LPD-APVVES----EGRSFP----VEIRYLPPLREDERLEDRVSRAVEHALAEESGSGPQDVLVFLPGQAE--------- 229 (858)
T ss_pred CCC-CCEEEE----CCCCCC----EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHEECCCHHH---------
T ss_conf 330-264200----787876----11022767875553347899999999961678863301001687778---------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCC---CCCHHHHCCCCCC
Q ss_conf 4343101465201211357832000021024465556667874110013542899888852048---5200010232113
Q gi|254780619|r 443 GNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYF---PLARISILSSDLE 519 (731)
Q Consensus 443 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~~f---p~~~v~~~d~d~~ 519 (731)
T Consensus 230 ----------------------------------------------------I~Rv~~~L~e~L~~rs~v~lcPLYG~L- 256 (858)
T TIGR01970 230 ----------------------------------------------------IRRVQEQLAERLDARSEVLLCPLYGEL- 256 (858)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHCCCCCCHHCCCCCCC-
T ss_conf ----------------------------------------------------999999999975178710005767888-
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHH-HHHHH--HH------HHHHH-HHHHHHHCC
Q ss_conf 5867899999862125765798704430231134520123300034431-02455--78------99999-875431102
Q gi|254780619|r 520 GGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLT-NADLR--SS------ERTFQ-LLSQVTGRA 589 (731)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~ilvgTq~i~kg~~fp~v~lv~il~aD~~l~-~pd~r--a~------E~~~q-ll~qv~gRa 589 (731)
T Consensus 257 -~~~aQ~~AI~P~a~GrRKVVLATNiAEtSLTIeGvRvV----iDsGl~R~arFDP~sG~TRL~~~RisqASA~QRAGRA 331 (858)
T TIGR01970 257 -ELAAQDRAIKPAAAGRRKVVLATNIAETSLTIEGVRVV----IDSGLARVARFDPKSGITRLETQRISQASATQRAGRA 331 (858)
T ss_pred -CHHHHHHHCCCCCCCCCEEEEEHHHHHHHEEECCEEEE----EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf -97899987087746673434200012221001763588----7156556763478887402445788973376512633
Q ss_pred CCCCCCCE
Q ss_conf 56678868
Q gi|254780619|r 590 GRFGLKSL 597 (731)
Q Consensus 590 gr~~~~g~ 597 (731)
T Consensus 332 GRle-pGv 338 (858)
T TIGR01970 332 GRLE-PGV 338 (858)
T ss_pred CCCC-CCH
T ss_conf 2211-141