HHsearch alignment for GI: 254780619 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=91.41 E-value=0.21 Score=29.88 Aligned_cols=197 Identities=21% Similarity=0.298 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH-HHHHHHHHHHHCCCCEEEEECCCH-HHHHHHHHHHCCCCCEEEEE
Q ss_conf 8378999999987520489619984475315799-999999998514684799715210-01344555430389768996
Q gi|254780619|r 200 DKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTE-VYLEIVAAVLHLGKQVLILLPEIS-LTSAILERFQKRFGVKPAEW 277 (731)
Q Consensus 200 t~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTE-VYl~li~~~L~~GkqvLiLvPEI~-Lt~Q~~~rl~~rF~~~v~v~ 277 (731)
T Consensus 311 eP~Qk~~fL~A---i~kPqGMvLVTGPTGSGKTVSLYT-----aL-----niLN~~~~NIST-----------AEDPVEI 366 (577)
T TIGR02538 311 EPDQKALFLEA---IHKPQGMVLVTGPTGSGKTVSLYT-----AL-----NILNTEEVNIST-----------AEDPVEI 366 (577)
T ss_pred CHHHHHHHHHH---HHCCCCCEEEECCCCCCHHHHHHH-----HH-----CCCCCCCCCCCC-----------CCCCEEE
T ss_conf 88899999999---707997288626659841687876-----31-----125776745011-----------4477246
Q ss_pred E-CCC-----CCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCEEEEEEECCCCCCHHCCCCC-CCHHHHHHHHHHHCC
Q ss_conf 2-355-----723566789999719973999400121100100013677405532100002443-224899999751103
Q gi|254780619|r 278 H-SSL-----STSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGIL-YNARDMSIVRGKIES 350 (731)
Q Consensus 278 H-S~l-----s~~eR~~~w~~i~~G~~~IVIGtRSAif~P~~nLglIIvDEEHd~sykq~~~pr-y~aRdvA~~Ra~~~~ 350 (731)
T Consensus 367 NLpGINQVnvNpK~-GLTFAaALr------------SFL-RQDPDIIMVGE-----------IRDLETAEIAiKAAq--T 419 (577)
T TIGR02538 367 NLPGINQVNVNPKI-GLTFAAALR------------SFL-RQDPDIIMVGE-----------IRDLETAEIAIKAAQ--T 419 (577)
T ss_pred EECCCCEECCCCCC-CCCHHHHHH------------HHC-CCCCCEEEEEC-----------CCCHHHHHHHHHHHC--C
T ss_conf 40771512046678-878799998------------640-68998898706-----------664215899999840--4
Q ss_pred CCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 21000024543246775321234441243223676543321102222332224547989999998862265517997422
Q gi|254780619|r 351 FPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNR 430 (731)
Q Consensus 351 ~~lilgSATPSles~~~~~~g~~~~~~l~~R~~~~~~P~i~ivDm~~~~~~~~~~lS~~l~~~i~~~l~~g~qvll~lnR 430 (731)
T Consensus 420 GHLVl--------------------STLHT--NdAp~Tl~RL~NMGiap----FNIASSV~LI~AQRLARR--------- 464 (577)
T TIGR02538 420 GHLVL--------------------STLHT--NDAPETLARLVNMGIAP----FNIASSVNLIMAQRLARR--------- 464 (577)
T ss_pred CCCEE--------------------CCCCC--CCHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHH---------
T ss_conf 87210--------------------10001--68589999997538413----799999999999975524---------
Q ss_pred CCEEHHCCCCCCCCC-CCCCCCCC-EEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEECCCCCCH
Q ss_conf 200000023565434-31014652-012113578320000210244655566678741100135428
Q gi|254780619|r 431 RGYAPLTLCQVCGNR-LKCLHCSC-WLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGI 495 (731)
Q Consensus 431 rGya~~~~C~~Cg~~-~~C~~C~~-~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gt 495 (731)
T Consensus 465 -------LCs~CK~~~~~~p~~~Ll~lGF~~e--dL~~--Pg~~ly~pvGC~~C~~~G-YKGR-vGi 518 (577)
T TIGR02538 465 -------LCSHCKAPVEEVPEEALLELGFTEE--DLAD--PGLKLYGPVGCEECSNTG-YKGR-VGI 518 (577)
T ss_pred -------CCCCCCCCCCCCCHHHHHHCCCCHH--HHCC--CCCEECCCCCCCCCCCCC-CEEE-EEE
T ss_conf -------0313687766468599985688868--9269--993861762610037987-2010-213