HHsearch alignment for GI: 254780619 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=93.63 E-value=0.13 Score=31.38 Aligned_cols=42 Identities=38% Similarity=0.618 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99999998752048961998447531579999999999851468479
Q gi|254780619|r 204 QDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVL 250 (731)
Q Consensus 204 ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvL 250 (731)
T Consensus 114 ~~v~~~l~~~-~~~~~~~vl~G~TG~GKT~iL~~L----~~~G~qvi 155 (311)
T TIGR03167 114 RFVIDQLEEL-PQPFPLIVLGGMTGSGKTELLHAL----ANAGAQVL 155 (311)
T ss_pred HHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHH----HHCCCCCC
T ss_conf 9999999714-546876998788887789999999----97699742