HHsearch alignment for GI: 254780619 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.20 E-value=0.74 Score=25.67 Aligned_cols=174 Identities=18% Similarity=0.193 Sum_probs=89.4
Q ss_pred CCEECHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHH-CCCC-CHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 320000210244655566678741100135428998888520-4852-00010232113586789999986212576579
Q gi|254780619|r 463 KLYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCE-YFPL-ARISILSSDLEGGGGRLQLQLSAIAKGEIDII 540 (731)
Q Consensus 463 ~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l~~~G~Gte~~~e~l~~-~fp~-~~v~~~d~d~~~~~~~~~~~~~~~~~~~~~il 540 (731)
T Consensus 580 aI~~sraGL~dp---~rP~-GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDMSEy~E------------~hsvsrL 643 (852)
T TIGR03346 580 AIRRSRAGLSDP---NRPI-GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME------------KHSVARL 643 (852)
T ss_pred HHHHHHCCCCCC---CCCC-EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHCC------------HHHHHHH
T ss_conf 999997188889---9974-58998678877689999999999855852069843044301------------2247785
Q ss_pred EEEHHHCCCCCCCCC---------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HCC----CCC-CCCCEEEEEEC
Q ss_conf 870443023113452---------01233000344310245-57899999875431--102----566-78868999932
Q gi|254780619|r 541 IGTQLVAKGHNFPRM---------SLVGVVDGDLGLTNADL-RSSERTFQLLSQVT--GRA----GRF-GLKSLGLIQAY 603 (731)
Q Consensus 541 vgTq~i~kg~~fp~v---------~lv~il~aD~~l~~pd~-ra~E~~~qll~qv~--gRa----gr~-~~~g~v~iQt~ 603 (731)
T Consensus 644 iGaPPGYVGy~egG~Lte~vr~~PysVvL~D--------EIEKAh~~V~~~lLQilD~G~ltD~~Gr~vdF~NtiiimTS 715 (852)
T TIGR03346 644 IGAPPGYVGYEEGGQLTEAVRRKPYSVVLFD--------EVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred CCCCCCCCCCCCCCEECHHHHHCCCEEEEEC--------CHHHHCHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEEEC
T ss_conf 5899976776878742398981988799853--------05430768999999882367430799988853556898615
Q ss_pred CCCCHHHHHHH-HCCHHHHHHHHHHHHHHCCCCCCH-HE-EEEEEECCCHHHHHHHHHHH
Q ss_conf 98648889999-589799999999999981888801-18-99988459989999999999
Q gi|254780619|r 604 QPTHPVMQALV-SGDADSFYESEIRARESVNLPPFG-RL-AAVIISGTKYQEVENYAYNL 660 (731)
Q Consensus 604 ~p~~~~~~~~~-~~d~~~f~~~el~~R~~~~~PPf~-~~-~~i~~~~~~~~~~~~~~~~~ 660 (731)
T Consensus 716 N~Ga~~i~~~~~~~~~~~~~~~~~~~~~~~F~PEflnRid~ii~F~~L~~~~l~~I~~~~ 775 (852)
T TIGR03346 716 NLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQ 775 (852)
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHH
T ss_conf 406599974114555799999999999965899899637868983789999999999999