HHsearch alignment for GI: 254780619 and conserved domain: TIGR03676
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=92.80 E-value=0.41 Score=27.64 Aligned_cols=91 Identities=24% Similarity=0.308 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCC--EEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEE
Q ss_conf 999988622655--179974222000000235654343101465201211357832000021024465556667874110
Q gi|254780619|r 411 IDGIRHTLARNE--QTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKM 488 (731)
Q Consensus 411 ~~~i~~~l~~g~--qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l 488 (731)
T Consensus 293 ~~ev~kALemGAVetLLIsE~L~~~---------R~~~kc~~c~~e~~~~~~~~---------~~~~~~~c~~cg~~~e~ 354 (403)
T TIGR03676 293 EEEVRKALEMGAVDTLLISEDLRKI---------RVTFKCPNCGYEEEKTVKPE---------EGDKSEACPKCGSELEI 354 (403)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCE---------EEEEECCCCCCEEEEECCCC---------CCCCCCCCCCCCCCEEE
T ss_conf 9999999862973169873256622---------79997688882588731544---------34456688556872046
Q ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCC
Q ss_conf 013542899888852048520001023211358
Q gi|254780619|r 489 IACGFGIERIAEEVCEYFPLARISILSSDLEGG 521 (731)
Q Consensus 489 ~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 521 (731)
T Consensus 355 ~e~~dliE~L~e~ak~-~-Ga~ve~IS~~seEG 385 (403)
T TIGR03676 355 VEEEDIIEELSELAEE-S-GAKVEIISTDTEEG 385 (403)
T ss_pred EECCCHHHHHHHHHHH-C-CCEEEEEECCCCCH
T ss_conf 4136189999999997-3-98899990898107